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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCAAATATGCAAGATGCTAAGGGGGATGCTCCTGGAGTTGAAAATGGGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagtagccattttgcatatgctgctgttgcttatgtgttacttgtatcatgtgatagtattttaaatgtttaattgaggataaatctacattctt...

Basic information

species Vitis vinifera
transcript Vv09s0002g04680.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351035450|gb|FQ463295.1|FQ463295
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|351033537|gb|FQ447696.1|FQ447696
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|349825219|gb|FQ417940.1|FQ417940
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|351026704|gb|FQ436357.1|FQ436357
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|71856570|gb|DT005625.1|DT005625
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|351056576|gb|FQ442404.1|FQ442404
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|71857129|gb|DT006184.1|DT006184
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|351021829|gb|FQ437214.1|FQ437214
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|351015172|gb|FQ445456.1|FQ445456
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|351016149|gb|FQ435469.1|FQ435469
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|351014027|gb|FQ434179.1|FQ434179
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAGACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|349830554|gb|FQ416852.1|FQ416852
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|351022620|gb|FQ447142.1|FQ447142
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|351045993|gb|FQ441376.1|FQ441376
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|110721835|gb|EE097540.1|EE097540
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|351031000|gb|FQ439036.1|FQ439036
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|351026139|gb|FQ428151.1|FQ428151
EST:     GGGATCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|110699605|gb|EE076751.1|EE076751
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|351026310|gb|FQ428322.1|FQ428322
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|349832595|gb|FQ421953.1|FQ421953
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|351044463|gb|FQ442994.1|FQ442994
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|351016635|gb|FQ424062.1|FQ424062
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|71856214|gb|DT005269.1|DT005269
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
EST: gi|351027160|gb|FQ440024.1|FQ440024
EST:     GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAG                         GTTGAGGTTCCTAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA
genomic: GGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagta ... tgacatgcagGTTGAGGTTCCAAAGAAAAAGGTGAAGAAAACAAATATTCCTGTATCAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGCAAATATGCAAGATGCTAAGGGGGATGCTCCTGGAGTTGAAAATGGGGTTCCAGAATCAGGTGACAAGTCTGTGCAGATGGAAACAGATACAAAGgtcagtagtagccattttgcatatgctgctgttgcttatgtgttacttgtatcatgtgatagtattttaaatgtttaattgaggataaatctacattctt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggataa