1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GATACATAGTTGATATGCAGTCCATGGACTCAACAGTTTCAGAAATAAACCGTCTAAGAGATGACCAATTATACCCAAAACTTGTAGCACTTGTTGACGGgtaagttgtgatatgaaaaaaggaaagagtttatatttgaatttgtctgtgactcaaccgtgctgccatttctgtgagacaccttgatgaacactttgttgttccttcatattctgatatggtttgcag
species | Vitis vinifera |
transcript | Vv09s0002g04590.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGTCTAAGAGATGACCAATTATACCCAAAACTTGTAGCACTTGTTGACGG GATGGCCACAATGTGGGGAACCATGCTAGAACATCATAAAAGCCAGTCAAAEST: gi|34549759|gb|CF517991.1|CF517991
genomic: CGTCTAAGAGATGACCAATTATACCCAAAACTTGTAGCACTTGTTGACGGgtaagttgtg ... tggtttgcagGATGGCCACAATGTGGGGAACCATGCTAGAACATCATAAAAGCCAGTCAAA
EST: CGTCTAAGAGATGACCAATTATACCCAAAACTTGTAGCACTTGTTGACGG GATGGCCACAATGTGGGGAACCATGCTAGAACATCATAAAAGCCAGTCAAAEST: gi|34550708|gb|CF518926.1|CF518926
genomic: CGTCTAAGAGATGACCAATTATACCCAAAACTTGTAGCACTTGTTGACGGgtaagttgtg ... tggtttgcagGATGGCCACAATGTGGGGAACCATGCTAGAACATCATAAAAGCCAGTCAAA
EST: CGTCTAAGAGATGACCAATTATACCCAAAACTTGTAGCACTTGTTGACGG GATGGCCCCAATGTGGGGAACCATGCTAGAACATCATAAAAGCCAGTCAAA
genomic: CGTCTAAGAGATGACCAATTATACCCAAAACTTGTAGCACTTGTTGACGGgtaagttgtg ... tggtttgcagGATGGCCACAATGTGGGGAACCATGCTAGAACATCATAAAAGCCAGTCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATACATAGTTGATATGCAGTCCATGGACTCAACAGTTTCAGAAATAAACCGTCTAAGAGATGACCAATTATACCCAAAACTTGTAGCACTTGTTGACGGgtaagttgtgatatgaaaaaaggaaagagtttatatttgaatttgtctgtgactcaaccgtgctgccatttctgtgagacaccttgatgaacactttgttgttccttcatattctgatatggtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG