Sequence
atgc intronic sequence ATGC exonic sequenceTGCATTAGGCAGACGGCCTTCGATGCTGTGTCATTGGATTATCAGTCTGTTACTGTAATTGTCGATGCCACCGCTGCTGCCACACCTGACATTCATCTTGgtatgtcctttatcccacttaccgtaatatgttgcactagtataaataataatgtggcaattggcatatctccatcttcttgcacttcaccttacatattctttcctagttgcctctaaagcttcgagctgcatactaacatgaactgctaaattttcatgaaccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g04140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G02130.2 (Glycine max), 5'ss of exon 4
TGCATTAGGCAGACGGCCTTCGATGCTGTGTCATTGGATTATCAGTCTGTTACTGTAATTGTCGATGCCACCGCTGCTGCCACACCTGACATTCATCTTGgtatgtcctttatcccacttaccgtaatatgttgcactagtataaataataatgtggcaattggcatatctccatcttcttgcacttcacct-tacatattctttcctagttgcctctaaagcttcgagctgcatactaacatgaactgctaaattttcatgaaccag
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TGTATTAGGCAAACTGTCTATGATGCTGTAGCATTGGACTATCAACCTGTAACTGTTATTGTTGATGCTACAGCAGCAGCCACACCTGATATTCATCTCGgtatgtatttt--tcaatttctcagaaatttttgca-----attgacaggaacttt---atttgtat-ttttcatcttagagaagatcttctctgcagtagatatttaagt---------------------------------------------------------
upper sequence: Vv09s0002g04140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G21780.1 (Glycine max), 5'ss of exon 5
TGCATTAGGCAGACGGCCTTCGATGCTGTGTCATTGGATTATCAGTCTGTTACTGTAATTGTCGATGCCACCGCTGCTGCCACACCTGACATTCATCTTGgtatgtcctttatcccacttaccgtaatatgttgc-actagtataaataataatgtggcaattggcatatctcc-atcttct-tgcacttcac-cttacatattctttcctagttgcctctaaagcttcgagctgcatactaacatgaactgctaaattttcatgaaccag
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TGCATTAGGCAAACTGTGTGTGATGCCGTAGCATTGGACTATCAGCCGGTAACTGTTATTGTTGATGCTACAGCAGCAGCCACACCTGATATTCATCTCGgtatgtatatt--tcaatgtctcagatgtttttgcgattgacaggaactttatttgaataatcatcttagagaagatcttctctgcagtagatatttaagta---------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110362353|gb|EC925882.1|EC925882EST: TACTGTAATTGTCGATGCCACCGCTGCTGCCACACCTGACATTCATCTTG CCAACATACTTGACATGAAAAATGTGGGAGTTGCAACCCCAACATTA-AAG
genomic: TACTGTAATTGTCGATGCCACCGCTGCTGCCACACCTGACATTCATCTTGgtatgtcctt ... catgaaccagCCAACATACTTGACATGAAAAATGTGGGAGTTGCAACCCCAACATTACAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCATTAGGCAGACGGCCTTCGATGCTGTGTCATTGGATTATCAGTCTGTTACTGTAATTGTCGATGCCACCGCTGCTGCCACACCTGACATTCATCTTGgtatgtcctttatcccacttaccgtaatatgttgcactagtataaataataatgtggcaattggcatatctccatcttcttgcacttcaccttacatattctttcctagttgcctctaaagcttcgagctgcatactaacatgaactgctaaattttcatgaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC