1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATGGAGTTCCAATTGGGAGGAAGGTGGACCTTACAGCATATGACAGCTATGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAGgttacttcacatcattccgattttcaaagcatccggtttaattatgttttggaatgataacatctcattatgtttgtctcattgttttttgtgttttag
species | Vitis vinifera |
transcript | Vv09s0002g03410.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAG CTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCATGAGGAAGAGAEST: gi|110418706|gb|EC984872.1|EC984872
genomic: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAGgttacttcac ... tgtgttttagCTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCATGAGGAAGAGA
EST: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAG CTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCATGAGGAAGAGAEST: gi|30251350|gb|CB969083.1|CB969083
genomic: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAGgttacttcac ... tgtgttttagCTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCATGAGGAAGAGA
EST: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAG CTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCAAGAGGAAGAGAEST: gi|30251265|gb|CB968998.1|CB968998
genomic: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAGgttacttcac ... tgtgttttagCTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCATGAGGAAGAGA
EST: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAG CTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCAAGAGGAAGAGAEST: gi|30251355|gb|CB969088.1|CB969088
genomic: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAGgttacttcac ... tgtgttttagCTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCATGAGGAAGAGA
EST: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAG CTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCAAGAGGAAGAGAEST: gi|30251271|gb|CB969004.1|CB969004
genomic: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAGgttacttcac ... tgtgttttagCTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCATGAGGAAGAGA
EST: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAG CTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCAAGAGGAAGAGAEST: gi|161721537|gb|FC069747.1|FC069747
genomic: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAGgttacttcac ... tgtgttttagCTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCATGAGGAAGAGA
EST: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAG CTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCAAGAGGAAGAGAEST: gi|110386232|gb|EC950813.1|EC950813
genomic: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAGgttacttcac ... tgtgttttagCTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCATGAGGAAGAGA
EST: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAG CTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCAAGAGGAAGAGAEST: gi|156736126|gb|EV240247.1|EV240247
genomic: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAGgttacttcac ... tgtgttttagCTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCATGAGGAAGAGA
EST: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAG CTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCAAGAGGAAGAGA
genomic: TGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAGgttacttcac ... tgtgttttagCTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCATGAGGAAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGGAGTTCCAATTGGGAGGAAGGTGGACCTTACAGCATATGACAGCTATGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAGgttacttcacatcattccgattttcaaagcatccggtttaattatgttttggaatgataacatctcattatgtttgtctcattgttttttgtgttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT