1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTATTCAAGAATGTTGGAGAGATCCACAATTCGGCCTATCTCCATATAATGTTCATTCTCATGATGGATTTCTTAAGCATCTGGTACTAAGAACGGGCAGgtactcagagttctacaaatttcttctattgttagctttagtgctttatggctcctatgaacgtccagtctagtgagacttatagtcatagttgtacaca...
species | Vitis vinifera |
transcript | Vv09s0002g02670.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTTCATTCTCATGATGGATTTCTTAAGCATCTGGTACTAAGAACGGGCAG GGATATCAAGACCGGTCTACCTGAACTTATGGTTAATTTTGTAACTTCATCEST: gi|30325919|gb|CD009181.1|CD009181
genomic: GTTCATTCTCATGATGGATTTCTTAAGCATCTGGTACTAAGAACGGGCAGgtactcagag ... tccttttcagGGATATCAAGACCGGTCTACCTGAACTTATGGTTAATTTTGTAACTTCATC
EST: GTTCATTCTCATGATGGATTTCTTAAGCATCTGGTACTAAGAACGGGCAG GGATATCAAGACCGGTCTACCTGAACTTATGGTTAATTTTGTAACTTCATCEST: gi|30326234|gb|CD009496.1|CD009496
genomic: GTTCATTCTCATGATGGATTTCTTAAGCATCTGGTACTAAGAACGGGCAGgtactcagag ... tccttttcagGGATATCAAGACCGGTCTACCTGAACTTATGGTTAATTTTGTAACTTCATC
EST: GTTCATTCTCATGATGGATTTCTTAAGCATCTGGTACTAAGAACGGGCAG GGATATCAAGACCGGTCTACCTGAACTTATGGTTAATTTTGTAACTTCATCEST: gi|37189974|gb|CF609323.1|CF609323
genomic: GTTCATTCTCATGATGGATTTCTTAAGCATCTGGTACTAAGAACGGGCAGgtactcagag ... tccttttcagGGATATCAAGACCGGTCTACCTGAACTTATGGTTAATTTTGTAACTTCATC
EST: GCATCTGGTACTAAGAACGGGCAG GGATATCAAGACCGGTCTACCTGAACTTATGGTTAATTTTGTAACTTCATC
genomic: GCATCTGGTACTAAGAACGGGCAGgtactcagag ... tccttttcagGGATATCAAGACCGGTCTACCTGAACTTATGGTTAATTTTGTAACTTCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATTCAAGAATGTTGGAGAGATCCACAATTCGGCCTATCTCCATATAATGTTCATTCTCATGATGGATTTCTTAAGCATCTGGTACTAAGAACGGGCAGgtactcagagttctacaaatttcttctattgttagctttagtgctttatggctcctatgaacgtccagtctagtgagacttatagtcatagttgtacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC