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ATTGATGATGATGGGAACTGCAGATGAGATTGTTAAGGCCCCGGAGAAGGGCCCTGTTTTCATGGAGGATCTTCCTGAAGAAGAGCAAGTGGTAGCTGTGgtaagatccatgactttatcttttactaaaacaaattggagggttgtctcttccttcccaaaccttgtttgaactctcggaggagaataaaatggatcca...
species | Vitis vinifera |
transcript | Vv09s0002g02500.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCCCTGTTTTCATGGAGGATCTTCCTGAAGAAGAGCAAGTGGTAGCTGTG GGTCACAGTGCTGGTTTATTTAATCTGGGAAACACCTGCTACATGAACTCTEST: gi|30306288|gb|CB983082.1|CB983082
genomic: GCCCTGTTTTCATGGAGGATCTTCCTGAAGAAGAGCAAGTGGTAGCTGTGgtaagatcca ... ctgctctcagGGTCACAGTGCTGGTTTATTTAATCTGGGAAACACCTGCTACATGAACTCT
EST: CCCTGTTTTCATGGAGGATCTTCCTGAAGAAGAGCAAGTGGTAGCTTGTG GGTCACAGTGCTGGTTTATTTAATCTGGGAAACACCTGCTACATGAACTCEST: gi|110722963|gb|EE099729.1|EE099729
genomic: CCCTGTTTTCATGGAGGATCTTCCTGAAGAAGAGCAAGTGGTAGCT-GTGgtaagatcca ... ctgctctcagGGTCACAGTGCTGGTTTATTTAATCTGGGAAACACCTGCTACATGAACTC
EST: GCCCTGTTTTCATGGAGGATCTTCCTGAAGAAGAGCAAGTGGTAGCTGTG GGTCACAGTGCTGGTTTATTTAATCTGGGAAACACCTGCTACATGAACTCTEST: gi|110699590|gb|EE076722.1|EE076722
genomic: GCCCTGTTTTCATGGAGGATCTTCCTGAAGAAGAGCAAGTGGTAGCTGTGgtaagatcca ... ctgctctcagGGTCACAGTGCTGGTTTATTTAATCTGGGAAACACCTGCTACATGAACTCT
EST: GCCCTGTTTTCATGGAGGATCTTCCTGAAGAAGAGCAAGTGGTAGCTGTG GGTCACAGTGCTGGTTTATTTAATCTGGGAAACACCTGCTACATGAACTCTEST: gi|110723331|gb|EE100521.1|EE100521
genomic: GCCCTGTTTTCATGGAGGATCTTCCTGAAGAAGAGCAAGTGGTAGCTGTGgtaagatcca ... ctgctctcagGGTCACAGTGCTGGTTTATTTAATCTGGGAAACACCTGCTACATGAACTCT
EST: GCCCTGTTTTCATGGAGGATCTTCCTGAAGAAGAGCAAGTGGTAGCTGTG GGTCACAGTGCTGGTTTATTTAATCTGGGAAACACCTGCTACATGAACTCTEST: gi|71864100|gb|DT013155.1|DT013155
genomic: GCCCTGTTTTCATGGAGGATCTTCCTGAAGAAGAGCAAGTGGTAGCTGTGgtaagatcca ... ctgctctcagGGTCACAGTGCTGGTTTATTTAATCTGGGAAACACCTGCTACATGAACTCT
EST: GCCCTGTTTTCATGGAGGATCTTCCTGAAGAAGAGCAAGTGGTAGCTGTG GGTCACAGTGCTGGTTTATTTAATCTGGGAAACACCTGCTACATGAACTCT
genomic: GCCCTGTTTTCATGGAGGATCTTCCTGAAGAAGAGCAAGTGGTAGCTGTGgtaagatcca ... ctgctctcagGGTCACAGTGCTGGTTTATTTAATCTGGGAAACACCTGCTACATGAACTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGATGATGATGGGAACTGCAGATGAGATTGTTAAGGCCCCGGAGAAGGGCCCTGTTTTCATGGAGGATCTTCCTGAAGAAGAGCAAGTGGTAGCTGTGgtaagatccatgactttatcttttactaaaacaaattggagggttgtctcttccttcccaaaccttgtttgaactctcggaggagaataaaatggatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa