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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGAAGTTGTGACTGGTACTGCAAAGAAGCAAGTAAAGGAGAAATCATCAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatggatccttttatctatcatctttcatctttcattttagacaaaaaaaagaagtggaatagatgtttgggtattggttatggtttggagtgaca...

Basic information

species Vitis vinifera
transcript Vv09s0002g01600.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110374261|gb|EC938930.1|EC938930
EST:     CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG                         CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: gi|110427146|gb|EC993577.1|EC993577
EST:     CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG                         CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: gi|110707135|gb|EE083281.1|EE083281
EST:     CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG                         CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: gi|110685169|gb|EE063284.1|EE063284
EST:     CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG                         CCACAGCAGCAACAGCCGCAGCAACGGGGATCTGAATCTCAGGGAAAGTAT
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: gi|161705464|gb|FC057057.1|FC057057
EST:     CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG                         CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: gi|110385832|gb|EC950388.1|EC950388
EST:     CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAA---GTG                         CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: gi|110401060|gb|EC967653.1|EC967653
EST:     AGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG                         CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
genomic: AGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: gi|110388646|gb|EC953419.1|EC953419
EST:     CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG                         CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: gi|110703434|gb|EE080277.1|EE080277
EST:     CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG                         CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAAGGAAAGTAT
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: gi|110402871|gb|EC963673.1|EC963673
EST:     CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG                         CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: gi|110685007|gb|EE062938.1|EE062938
EST:     CAAATCCTAATCAAACTCTAAAGTGGTG                         CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
genomic: CAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTGAAGTTGTGACTGGTACTGCAAAGAAGCAAGTAAAGGAGAAATCATCAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatggatccttttatctatcatctttcatctttcattttagacaaaaaaaagaagtggaatagatgtttgggtattggttatggtttggagtgaca

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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataga