1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATTTGAAGTTGTGACTGGTACTGCAAAGAAGCAAGTAAAGGAGAAATCATCAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatggatccttttatctatcatctttcatctttcattttagacaaaaaaaagaagtggaatagatgtttgggtattggttatggtttggagtgaca...
species | Vitis vinifera |
transcript | Vv09s0002g01600.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTATEST: gi|110427146|gb|EC993577.1|EC993577
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTATEST: gi|110707135|gb|EE083281.1|EE083281
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTATEST: gi|110685169|gb|EE063284.1|EE063284
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG CCACAGCAGCAACAGCCGCAGCAACGGGGATCTGAATCTCAGGGAAAGTATEST: gi|161705464|gb|FC057057.1|FC057057
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTATEST: gi|110385832|gb|EC950388.1|EC950388
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAA---GTG CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTATEST: gi|110401060|gb|EC967653.1|EC967653
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: AGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTATEST: gi|110388646|gb|EC953419.1|EC953419
genomic: AGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTATEST: gi|110703434|gb|EE080277.1|EE080277
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAAGGAAAGTATEST: gi|110402871|gb|EC963673.1|EC963673
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTG CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTATEST: gi|110685007|gb|EE062938.1|EE062938
genomic: CAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
EST: CAAATCCTAATCAAACTCTAAAGTGGTG CCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
genomic: CAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatgga ... cattggacagCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTGAAGTTGTGACTGGTACTGCAAAGAAGCAAGTAAAGGAGAAATCATCAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGgtaaaatggatccttttatctatcatctttcatctttcattttagacaaaaaaaagaagtggaatagatgtttgggtattggttatggtttggagtgaca
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