Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACTTTACTGCAACATTGGAAATCCTCAATCTCTTGGTCAACAGCCAATTACTTTTTTCCGAGAGgtgggttttttgtacctttatagtatcatatattatttcagctagagcaattcctaatcattttcctccctgtcgtag

Basic information

species Vitis vinifera
transcript Vv09s0002g00340.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g00340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G01630.4 (Glycine max), 5'ss of exon 4
ATACTTTACTGCAACATTGGAAATCCTCAATCTCTTGGTCAACAGCCAATTACTTTTTTCCGAGAGgtgggttttttgtacctttat--agt-atcatatattatttcagctagagcaattcctaatc--attttcctccctgtcgtag
||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||  |  |||| ||  | | |  ||| |    |    | ||||  |  |||||| | || |   | | ||    || |   ||
ATACTTTACTGCAACATTGGAAATCCTCAGTCTCTTGGCCAGCAGCCAATAACTTTTTTCCGAGAGgtttgccttttataattctgttcagtgaatgcagcaaaattcaaattaagcaatgcttattgcgactatctcatctctgccag

upper sequence: Vv09s0002g00340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G05130.1 (Glycine max), 5'ss of exon 4
ATACTTTACTGCAACATTGGAAATCCTCAATCTCTTGGTCAACAGCCAATTACTTTTTTCCGAGAGgtgggttttttgtacctttat--agt-atcatatattatttcagctagagcaattcctaatc--attttcctccctgtcgtag
||||||||||||||||||||||||||||| ||||| || || |||||||| |||||||||||||||||  |  |||| ||  | | |  ||| |    |    ||||||  |  |||||| | |  ||  | | || |  ||||   ||
ATACTTTACTGCAACATTGGAAATCCTCAGTCTCTGGGCCAGCAGCCAATAACTTTTTTCCGAGAGgtttgccttttataattctgttcagtgaatgcagcaaatttcaaattaagcaatgcattttctgactatcttatctgtgccag

upper sequence: Vv09s0002g00340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G01630.3 (Glycine max), 5'ss of exon 4
ATACTTTACTGCAACATTGGAAATCCTCAATCTCTTGGTCAACAGCCAATTACTTTTTTCCGAGAGgtgggttttttgtacctttat--agt-atcatatattatttcagctagagcaattcctaatc--attttcctccctgtcgtag
                              |||||||| || |||||||| |||||||||||||||||  |  |||| ||  | | |  ||| |    |    | ||||  |  |||||| | || |   | | ||    || |   ||
------------------------------TCTCTTGGCCAGCAGCCAATAACTTTTTTCCGAGAGgtttgccttttataattctgttcagtgaatgcagcaaaattcaaattaagcaatgcttattgcgactatctcatctctgccag

upper sequence: Vv09s0002g00340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G72330.3 (Arabidopsis thaliana), 5'ss of exon 4
ATACTTTACTGCAACATTGGAAATCCTCAATCTCTTGGTCAACAGCCAATTACTTTTTTCCGAGAGgtgggttttttgtacctttatagtatcatatattatttcagctagagcaattcctaatcattttcctccctgtcgtag
||| | || ||||||||||| |||||||||||||||||||| | ||| || |  || ||||| |||||  ||   |  |     ||     |    | | || ||||| | ||  ||      ||  |   ||   || |  ||
ATAATCTATTGCAACATTGGGAATCCTCAATCTCTTGGTCAGCTGCCTATAAAGTTCTTCCGTGAGgtaagtgaatgtttttggtactagtttggttgtcatatcagccacagagatataacgtctatcatctatatgcctcag

upper sequence: Vv09s0002g00340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G17290.1 (Arabidopsis thaliana), 5'ss of exon 4
ATACTTTACTGCAACATTGGAAATCCTCAATCTCTTGGTCAACAGCCAATTACTTTTTTCCGAGAGgtgggttttttgtacctttatagtatcatatattatttcagctagagcaattcctaatcattttcctccctgtcgtag
||  | ||||| || || || |||||||||||||||||||||||||| || || || ||| |||||||   |   | |  | ||||||||      |  |     |  |  | ||     ||     |  | |   | ||  ||
ATTATCTACTGTAATATCGGGAATCCTCAATCTCTTGGTCAACAGCCTATAACATTCTTCAGAGAGgtaaataagt-gagcttttatagtgctggtttgttccatatgttaatcatgagttagcttgtaacatttatatctcag

upper sequence: Vv09s0002g00340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S120_131V6.2 (Physcomitrella patens), 5'ss of exon 5
ATACTTTACTGCAACATTGGAAATCCTCAATCTCTTGGTCAACAGCCAATTACTTTTTTCCGAGAGgtgggttttttgt-----------------accttta------tagtatcatatattatttcagctagagcaattc------ctaatcattttcctccctgtcgtag-----------------------------------------------------------------------------------------
||  |||||||||||||||| ||||||||||| || |||||| | || || || |||||| |||||||  |   ||| |                 |   |||      || ||| |||| || ||  ||   | ||| ||       ||| | | | | |||   |   |                                                                                           
ATTATTTACTGCAACATTGGCAATCCTCAATCCCTCGGTCAAAAACCGATCACCTTTTTCAGAGAGgtaagacatttatggaaaatcgacacgtacattcttacgtggttaatattatattttgttgaagagggtgcagtttgattctctagtaaatcttctcttagatttcatgacctttgttggtttagttcgctcattttgaaggttttctgttgatattagttgactcaatttgtaatcaagtcttattattattcag

upper sequence: Vv09s0002g00340.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S7_123V6.1 (Physcomitrella patens), 5'ss of exon 4
ATACTTTACTGCAACATTGGAAATCCTCAATCTCTTGGTCAACAGCCAATTACTTTTTTCCGAGAGgtgg-gttttttgtacctttatagtatcatat--attatttcagctagagcaattcctaatcattttcct-ccctgtcgtag------------------
||  | |||||||||||||| ||||| ||||| ||  |||||| |||| ||||||| |||||||||||   |  ||   |  |  |   |  || | |  || || |    | |   | ||  |   ||||||  |   |  | |                     
ATTGTGTACTGCAACATTGGTAATCCGCAATCGCTGAGTCAACCGCCAGTTACTTTCTTCCGAGAGgtaaagcattccattgcacttgggcttcttgtttatcatcttgaatggcatagttaatgtacatttttttattcaattgcttatataagttattttttcc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717648|gb|FC066273.1|FC066273
EST:     TTGGAAATCCTCAATCTCTTGGTCAACAGCCAATTACATTTTTCCGAGAG                         GTTATTGCACTATGTGATCATCCACCTATTTTGGACAAAAGTGAGACACAG
genomic: TTGGAAATCCTCAATCTCTTGGTCAACAGCCAATTACTTTTTTCCGAGAGgtgggttttt ... cctgtcgtagGTTATTGCACTATGTGATCATCCACCTATTTTGGACAAAAGTGAGACACAG