1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTTTAGTTCACCAGAAGAGCAGGAGGTTTACATTCGTAACTGGCTTGAGGAAAGGGTTGGTTTTAAGGCTGATTTCAAGATCTCCTTTTATCCAGGAAAGgtagttatttgatgaactggattcttcactctcttgttaatcattatagtcaataaatgacatatttgttcttgttgtttcttag
species | Vitis vinifera |
transcript | Vv08s0105g00260.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAGGGTTGGTTTTAAGGCTGATTTCAAGATCTCCTTTTATCCAGGAAAG TTTTCAAAATCTAGGCGGAGTATTATACCTGCTGGAGATACTTCTCAGTTTEST: gi|110725725|gb|EE102558.1|EE102558
genomic: AAAGGGTTGGTTTTAAGGCTGATTTCAAGATCTCCTTTTATCCAGGAAAGgtagttattt ... tgtttcttagTTTTCAAAATCTAGGCGGAGTATTATACCTGCTGGAGATACTTCTCAGTTT
EST: CTTTTATCCAGGAAAG TTTTCAAAATCTAGGCGGAGTATTATACCTGCTGGAGATACTTCTCAGTTT
genomic: CTTTTATCCAGGAAAGgtagttattt ... tgtttcttagTTTTCAAAATCTAGGCGGAGTATTATACCTGCTGGAGATACTTCTCAGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTAGTTCACCAGAAGAGCAGGAGGTTTACATTCGTAACTGGCTTGAGGAAAGGGTTGGTTTTAAGGCTGATTTCAAGATCTCCTTTTATCCAGGAAAGgtagttatttgatgaactggattcttcactctcttgttaatcattatagtcaataaatgacatatttgttcttgttgtttcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT