1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGCTGCTGAGATTGTTTCTGCAGTTTCTCATCTTCACGCAAATGGAATAATGCATAGGGATCTTAAACCTGAAAATATCTTACTGGATGCAGATGGCCATgtatgctctctcgctctctctctctctctctctttctctctttttcttttgtgtgtatgactgtaatatcattcactctctcaacttaacatgttactcattccttaatttag
species | Vitis vinifera |
transcript | Vv08s0058g01440.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCATAGGGATCTTAAACCTGAAAATATCTTACTGGATGCAGATGGCCAT GCCATGTTGACTGATTTTGGCCTGGCAAAGGAATTTGATGAGAATACGAGAEST: gi|110362604|gb|EC926149.1|EC926149
genomic: TGCATAGGGATCTTAAACCTGAAAATATCTTACTGGATGCAGATGGCCATgtatgctctc ... cttaatttagGCCATGTTGACTGATTTTGGCCTGGCAAAGGAATTTGATGAGAATACGAGA
EST: TGCATAGGGATCTTAAACCTGAAAATATCTTACTGGATGCAGATGGCCAT GCCATGTTGACTGATTTTGGCCTGGCAAAGGAATTTGATGAGAATACGAGAEST: gi|30252598|gb|CB970149.1|CB970149
genomic: TGCATAGGGATCTTAAACCTGAAAATATCTTACTGGATGCAGATGGCCATgtatgctctc ... cttaatttagGCCATGTTGACTGATTTTGGCCTGGCAAAGGAATTTGATGAGAATACGAGA
EST: TGCATAGGGATCTTAAACCTGAAAATATCTTACTGGATGCAGATGGCCAT GCCATGTTGACTGATTTTGGCCTGGCAAAGGAATTTGATGAGAATACGAGAEST: gi|37184429|gb|CF603783.1|CF603783
genomic: TGCATAGGGATCTTAAACCTGAAAATATCTTACTGGATGCAGATGGCCATgtatgctctc ... cttaatttagGCCATGTTGACTGATTTTGGCCTGGCAAAGGAATTTGATGAGAATACGAGA
EST: TGCATAGGGATCTTAAACCTGAAAATATCTTACTGGATGCAGATGGCCAT GCCATGTTGACTGATTTTGGCCTGGCAAAGGAATTTGATGAGAATACGAGA
genomic: TGCATAGGGATCTTAAACCTGAAAATATCTTACTGGATGCAGATGGCCATgtatgctctc ... cttaatttagGCCATGTTGACTGATTTTGGCCTGGCAAAGGAATTTGATGAGAATACGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGCTGAGATTGTTTCTGCAGTTTCTCATCTTCACGCAAATGGAATAATGCATAGGGATCTTAAACCTGAAAATATCTTACTGGATGCAGATGGCCATgtatgctctctcgctctctctctctctctctctttctctctttttcttttgtgtgtatgactgtaatatcattcactctctcaacttaacatgttactcattccttaatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG