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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGCAAAGGCTCCCGTGGGGATGTGACTATATTGCCCACACTTGTAATAAACAATAGACAGTACAGAGgtttgtggcagtatttatagagaatttcagttgctagccaactccttgggctgtttccgtaacctttactgctgcttggtttcag

Basic information

species Vitis vinifera
transcript Vv08s0058g01360.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os12g02390.1 (Oryza sativa), 5'ss of exon 4
ATTGGCAAAGGCTCCCGTGGGGATGTGACTATATTGCCCACACTTGTAATAAACAATAGACAGTACAGAGgtttgtggc--agtatttatagagaatttcagttgctagccaactccttgggctgtttccgtaacctttactgctgcttggttt--cag
|||||||| ||||| ||||| ||||| || || || || || |||||||| ||||||||||| ||||||||||||||      |||  ||  | || | ||     |||    |   || |    |    ||   |||  |     ||| ||||  |||
ATTGGCAAGGGCTCTCGTGGTGATGTTACCATCTTACCGACTCTTGTAATCAACAATAGACAATACAGAGgtttgtgctctgctatccatc-ataactacaagaagtagaatgcaattttgaggttcctggtgtgcttatccaaatctttgtttgtcag

upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os11g02464.1 (Oryza sativa), 5'ss of exon 4
ATTGGCAAAGGCTCCCGTGGGGATGTGACTATATTGCCCACACTTGTAATAAACAATAGACAGTACAGAGgtttgtggc--agtatttatagagaatttcagttgct-agccaactccttgggctgtttccgtaacctttactgctgcttggtt-tcag
|||||||| ||||| ||||| ||||| || || || || || |||||||| ||||||||||| ||||||||||||||      |||  ||    | |   ||  |   | |  | |  |  || |  ||  ||  | | | |   |  ||| || ||||
ATTGGCAAGGGCTCTCGTGGTGATGTTACCATCTTACCGACTCTTGTAATCAACAATAGACAATACAGAGgtttgtgctctgctatccatcataactacaagaagtagaacgcaattttgaggttccttgtgtg-cttatccaaatctttgtttgtcag

upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G389362_T01 (Zea mays), 5'ss of exon 5
ATTGGCAAAGGCTCCCGTGGGGATGTGACTATATTGCCCACACTTGTAATAAACAATAGACAGTACAGAGgtttgtggcagtatttatagagaatttcagttgcta-gccaactccttgggctgtttccgtaacctttactgctgcttggtttcag--
|||||||| ||||| ||||| ||||| || || || || || || ||||| ||||||||||| ||||||||| |||| | || | |||  |   ||| |||    |       |   || | |       | |  ||  | |    |  |||||    
ATTGGCAAGGGCTCTCGTGGTGATGTTACCATCTTACCAACTCTGGTAATTAACAATAGACAATACAGAGgtatgtg-ctgt-tctatctatcctttaagtcatgataagggtttgctgagatcaccagatgaatttatccgagcttatgtttctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33405593|gb|CF211220.1|CF211220
EST:     GGATGTGACTATATTGCCCACACTTGTAATAAACAATAGACAGTACAGAG                         GTAAGCTGGACAAAGGAGCAGTTCTCAAGGCCATTTGTGCCGGTTTCCAAG
genomic: GGATGTGACTATATTGCCCACACTTGTAATAAACAATAGACAGTACAGAGgtttgtggca ... ttggtttcagGTAAGCTGGACAAAGGAGCAGTTCTCAAGGCCATTTGTGCCGGTTTCCAAG
EST: gi|29781753|gb|CB346482.2|CB346482
EST:     ACTTGTAATAAACAATAGACAGTACAGAG                         GTAAGCTGGACAAAGGAGCAGTCCTCAAGGCCATTTGTGCCGGTTTCCAAG
genomic: ACTTGTAATAAACAATAGACAGTACAGAGgtttgtggca ... ttggtttcagGTAAGCTGGACAAAGGAGCAGTTCTCAAGGCCATTTGTGCCGGTTTCCAAG