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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTCGTAAATATGCCAAGTCTGAGAGAGTTTTGTTTCACTATAATGGACATGGTGTACCAAAGCCGACTGCTAATGGTGAAATTTGGCTTTTCAATAAGgtattttattactttgaagttctgccgtgctattttattgatatcgcctttagatttttctcctattctgactggtgtattggtgaag

Basic information

species Vitis vinifera
transcript Vv08s0058g00890.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 5'ss of exon 4
GTGTCGTAAATATGCCAAGTCTGAGAGAGTTTTGTTTCACTATAATGGACATGGTGTACCAAAGCCGACTGCTAATGGTGAAATTTGGCTTTTCAATAAGgt--attttatta---ctttgaa-gttctgccgtgctattttattgatatcgcctttagatttttctcctattctgactggtgtattggtgaag
 || ||||||| ||| |   | ||||||||  | ||||| || ||||| ||||||||||||||||| || |||||||| || |||||| | || || |||||  || ||   |   |  || |    |||| |   | ||| ||  || |    ||| ||       ||  || |   |    | |||||| ||
TTGCCGTAAATTTGCTAGAACAGAGAGAGTCCTTTTTCATTACAATGGTCATGGTGTACCAAAGCCTACAGCTAATGGGGAGATTTGGGTATTTAACAAGgtgaatgttgcaaaggcactgcataagctgctgcattgttt-atccatgtgtgtttttgacgaagtgcccttttttttttactttttggtgcag

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 5'ss of exon 3
GTGTCGTAAATATGCCAAGTCTGAGAGAGTTTTGTTTCACTATAATGGACATGGTGTACCAAAGCCGACTGCTAATGGTGAAATTTGGCTTTTCAATAAGgtattttattactttgaagttctgccgtgctattttattgatatcgcctttagatttttctcc---tattctgactggtgtattggtgaag
 || ||||||| ||| |   | ||||||||  | ||||| || ||||| ||||||||||||||||| || |||||||| || |||||| | || || |||||   |  || |   ||   |       |||  |  |||| |    | | |   |||||  |    |   ||   |    | || ||| ||
TTGCCGTAAATTTGCTAGAACAGAGAGAGTCCTTTTTCATTACAATGGTCATGGTGTACCAAAGCCTACAGCTAATGGGGAGATTTGGGTATTTAACAAGgtgaat-gttgcaaagacactgcataa-gctgctgcattgtttatccatgtgtgtttttgacgaagtgccctttttttactttttgtgcag

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 4
GTGTCGTAAATATGCCAAGTCTGAGAGAGTTTTGTTTCACTATAATGGACATGGTGTACCAAAGCCGACTGCTAATGGTGAAATTTGGCTTTTCAATAAGgtattttattactttgaagtt-ctgccgtgct-attttattgatatcgcct---ttagatttttctccta--ttctgactggtgtattggtgaag----------
 || || ||||||||||  || ||||||||| | || || |||||||| ||||| ||||||||||| ||  |||||||||| |||||| | || || ||||||    ||||   |||||   |||   ||||   |||       |  | |    ||| | | |||  ||  ||   |  |  || ||  || |           
TTGCCGCAAATATGCCAGATCAGAGAGAGTTCTTTTCCATTATAATGGCCATGGCGTACCAAAGCCTACATCTAATGGTGAGATTTGGGTGTTTAACAAGgtaaa--attatgatgaagacactgtattgcttgctttgcatgccttacttatcataggtgtctctgataaattaaaatggtcgtttttttgcattttcttgcag

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 4
GTGTCGTAAATATGCCAAGTCTGAGAGAGTTTTGTTTCACTATAATGGACATGGTGTACCAAAGCCGACTGCTAATGGTGAAATTTGGCTTTTCAATAAGgt--at-tttattactttgaagttctgccgtg--ctattttattgatatcgcctttagatttttctcctattctg--actggtgtattggtgaag------
 |||||||||||||| ||||| || |||||||| || || || ||||| |||||||| ||||| || ||||||||||||||||||||| | |||||||||||  || || |||  ||| |  |  ||  |||   || ||  ||||||   |  ||    || ||| | || |||  | ||  ||| | ||  |       
TTGTCGTAAATATGCAAAGTCGGAAAGAGTTTTATTCCATTACAATGGGCATGGTGTGCCAAAACCAACTGCTAATGGTGAAATTTGGGTCTTCAATAAGgtcaatgttcattctttttagttcttgatgtgaggtagttatttgataaatcaattgttgttctcttc-atcctggaaatgtagtactagttgacaaagaa

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 4
GTGTCGTAAATATGCCAAGTCTGAGAGAGTTTTGTTTCACTATAATGGACATGGTGTACCAAAGCCGACTGCTAATGGTGAAATTTGGCTTTTCAATAAGgt--at-tttattactttgaagttctgccgtg--ctattttattgatatcgcctttagatttttctcctattctgac--tggtgtattggtgaag------
 |||||||||||||| ||||| || |||||||| || || || ||||| |||||||| ||||| || ||||||||||||||||||||| | |||||||||||  || || |||  ||| |  |  ||  | |   || ||  ||||||   |  || | | ||  |   || ||| |  ||  ||| | ||  |       
TTGTCGTAAATATGCAAAGTCGGAAAGAGTTTTATTCCATTACAATGGGCATGGTGTGCCAAAACCAACTGCTAATGGTGAAATTTGGGTCTTCAATAAGgtcgatgttcattctttttagttcttgatgagaggtagttatttgataaatcaatt-gttgttcttttcatcctggcaatgtagtactagttgacaaagaa

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 4
GTGTCGTAAATATGCCAAGTCTGAGAGAGTTTTGTTTCACTATAATGGACATGGTGTACCAAAGCCGACTGCTAATGGTGAAATTTGGCTTTTCAATAAGgt-attttattactttgaagttctgccgtg-ctattttattgatatcgcctttagatttttctcctattctgactggtgtattggtgaag
 || || |||||||| ||| ||||||||||||||||||||||||| || |||||||| || || || ||  ||||||||||||| ||| ||| ||||||||| | |||  |    |     ||| |  || | || || ||   |     ||   ||    | |||||||   || ||||    ||| ||
TTGCCGGAAATATGCAAAGACTGAGAGAGTTTTGTTTCACTATAACGGGCATGGTGTCCCTAAACCTACACCTAATGGTGAAATCTGGGTTTACAATAAGgtcagttttctttcctttctctctacattgtccatgttcttagaagtctgtt---atcagccacctattc-atcttgtgt----gtgcag

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 4
GTGTCGTAAATATGCCAAGTCTGAGAGAGTTTTGTTTCACTATAATGGACATGGTGTACCAAAGCCGACTGCTAATGGTGAAATTTGGCTTTTCAATAAGgtattttattactttgaagttctgccgtgctattttattgatatcgcctttagatttttctcctattctgactggtgtattggtgaag---
 ||||| |||||||| ||| | ||||||||| | || || |||||||| |||||||| ||||| || || |||||||||||||||||| | || || ||||| | || ||   | |   ||        |||   | ||  | |  | | | |  | ||  |     |||| || |    || |  ||   
TTGTCGGAAATATGCAAAGACCGAGAGAGTTCTATTCCATTATAATGGGCATGGTGTGCCAAAACCTACAGCTAATGGTGAAATTTGGGTATTTAACAAGgtctgttttttactagcgttttcttttctctaccatgttcttgttccttctcgtctgttaccacgagctgattgattctctgtttgagcag

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S124_156V6.1 (Physcomitrella patens), 5'ss of exon 4
GTGTCGTAAATATGCCAAGTCTGAGAGAGTTTTGTTTCACTATAATGGACATGGTGTACCAAAGCCGACTGCTAATGGTGAAATTTGGCTTTTCAATAAGgtattttattactttgaagttctgccgtgctattttattgatatcgcctttagatttttctcctattctga-----ctggtgtattg--gtgaag-------
 || || |||  ||| |||   || || ||  ||||||| || || || |||||||||||||  || || |||||||||||||| ||| | |||||||||||   |  |||   |   ||| | |  |    ||| || ||  | |    |||| | |  |  |||  | |     || |   || |  ||| ||       
TTGCCGAAAAAGTGCGAAGAGCGAAAGGGTGCTGTTTCATTACAACGGCCATGGTGTACCAAGACCAACAGCTAATGGTGAAATCTGGGTGTTCAATAAGgtggatatttagcgtattgttgtacttta--gtttgatggagttggttaatagagtatgataatatcgttagaagccttgaacatcgaggtgtagtgtaaac