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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTCCTGTCTCCTACTTGTTGCTATCTAAACCTGCAAAGGGTGTTGAGAAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaattgaacttctcttgggtatctgtggttgattcccaatatatgcacctaacatttctaagaacacctctgcag

Basic information

species Vitis vinifera
transcript Vv08s0056g01570.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407379|gb|CF213006.1|CF213006
EST:     AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAA                         GGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCCTCAATTCAGTTTGA
genomic: AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA
EST: gi|352768554|gb|FQ467510.1|FQ467510
EST:     ATCCTTTTCTCTTCTCTCCCTCCTGGACAAAAAACCTTCCAATCTACCAA                         GAAAGTAATTGC
genomic: ATCCTTTTCTCTTCTCTCCCTCCTGGACAAAAT-CCTTCCAATCTAC-AAgtaaggaatt ... acctctgcagGGAAGTAGTTGC
EST: gi|33408747|gb|CF214374.1|CF214374
EST:     AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAA                         GGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCCTCAATTCAGTTTGA
genomic: AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA
EST: gi|110719521|gb|EE094722.1|EE094722
EST:     AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAA                         GGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCCTCAATTCAGTTTGA
genomic: AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA
EST: gi|352773499|gb|FQ472281.1|FQ472281
EST:     --A-CCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAA                         GGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA
genomic: AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA
EST: gi|352794891|gb|FQ477001.1|FQ477001
EST:     AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAA                         GGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCCTCAATTCAGTTTGA
genomic: AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA
EST: gi|33410520|gb|CF216147.1|CF216147
EST:     AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAA                         GGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCCTCAATTCAGTTTGA
genomic: AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA
EST: gi|33410263|gb|CF215890.1|CF215890
EST:     AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAA                         GGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCCTCAATTCAGTTTGA
genomic: AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA
EST: gi|110723015|gb|EE099845.1|EE099845
EST:     AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAA                         GGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCCTCAATTCAGTTTGA
genomic: AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA
EST: gi|110702737|gb|EE078971.1|EE078971
EST:     AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAA                         AGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCCTCAATTCAGTTTGA
genomic: AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA
EST: gi|161714928|gb|FC062706.1|FC062706
EST:     AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAA                         GGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCCTCA-TTCAGTTTGA
genomic: AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA
EST: gi|161708679|gb|FC059208.1|FC059208
EST:     GACAAAATCCTTCCAATCTACAA                         GGAA-TAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCCTCAATTCAGTTTGA
genomic: GACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA
EST: gi|161715510|gb|FC069060.1|FC069060
EST:     AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAA                         GGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTC
genomic: AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTC
EST: gi|110688611|gb|EE067363.1|EE067363
EST:     CTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAA                         GGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCCTCAATTCAGTTTGA
genomic: CTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA
EST: gi|110687789|gb|EE065597.1|EE065597
EST:     AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAA                         GGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCCTCAATTCAGTTTGA
genomic: AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA
EST: gi|33406771|gb|CF212398.1|CF212398
EST:     AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAA                         GGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCCTCAATTCAGTTTGA
genomic: AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA
EST: gi|156735832|gb|EV239953.1|EV239953
EST:     AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAA                         GGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCCTCAATTCAGTTTGA
genomic: AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA
EST: gi|110688260|gb|EE066612.1|EE066612
EST:     AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAA                         AGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCCTCAATTCAGTTTGA
genomic: AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA
EST: gi|71855557|gb|DT004612.1|DT004612
EST:     AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAA                         GGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCCTCAATTCAGTT
genomic: AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTT
EST: gi|33409880|gb|CF215507.1|CF215507
EST:     AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCGATCTACAA                         GGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCCTCAATTCAGTTTGA
genomic: AAATCCTTTTCTCTTCTCTCCCTCCTGGACAAAATCCTTCCAATCTACAAgtaaggaatt ... acctctgcagGGAAGTAGTTGCTGAGCTAAAGGCTGCTGGTGCTTCTTCAATTCAGTTTGA