1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGTATCCACAAGGAAGGATGTCACATCATTTTCGAGAGATGCGTGTAGGTGATTATCTGGCTGTAAAGGGACCCAAGgtagatgttctcttgctttcatattaacttcgttagactggtttttggttgcatgcttgttataagattgaattgtgccccattccatgaggcagtggta...
species | Vitis vinifera |
transcript | Vv08s0056g01150.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTTTCGAGAGATGCGTGTAGGTGATTATCTGGCTGTAAAGGGACCCAAG GGGCGTTTCAGGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCTEST: gi|33407295|gb|CF212922.1|CF212922
genomic: ATTTTCGAGAGATGCGTGTAGGTGATTATCTGGCTGTAAAGGGACCCAAGgtagatgttc ... attctatcagGGGCGTTTCAGGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCT
EST: ATTTTCGAGAGATGCGTGTAGGTGATTATCTGGCTGTAAAGGGACCCAAG GGGCGTTTCAAGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCTEST: gi|110375510|gb|EC940502.1|EC940502
genomic: ATTTTCGAGAGATGCGTGTAGGTGATTATCTGGCTGTAAAGGGACCCAAGgtagatgttc ... attctatcagGGGCGTTTCAGGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCT
EST: ATTTTCGAGAGATGCGTGTAGGTGATTATCTGGCTGTAAAGGGACCCAAG GGGCGTTTCAAGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCTEST: gi|351024116|gb|FQ423539.1|FQ423539
genomic: ATTTTCGAGAGATGCGTGTAGGTGATTATCTGGCTGTAAAGGGACCCAAGgtagatgttc ... attctatcagGGGCGTTTCAGGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCT
EST: ATTTTCGAGAGATGCGTGTAGGTGATTGTCTGGCTGTAAAGGGTCCCAAG GGGCGTTTCAAGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCTEST: gi|110397391|gb|EC963126.1|EC963126
genomic: ATTTTCGAGAGATGCGTGTAGGTGATTATCTGGCTGTAAAGGGACCCAAGgtagatgttc ... attctatcagGGGCGTTTCAGGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCT
EST: ATTTTCGAGAGATGCGTGTAGGTGATTATCTGGCTGTAAAGGGACCCAAG GGGCGTTTCAGGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCTEST: gi|33406880|gb|CF212507.1|CF212507
genomic: ATTTTCGAGAGATGCGTGTAGGTGATTATCTGGCTGTAAAGGGACCCAAGgtagatgttc ... attctatcagGGGCGTTTCAGGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCT
EST: ATTTTCGAGAGATGCGTGTAGGTGATTATCTGGCTGTAAAGGGACCCAAG GGGCGTTTCAGGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCTEST: gi|351015566|gb|FQ426808.1|FQ426808
genomic: ATTTTCGAGAGATGCGTGTAGGTGATTATCTGGCTGTAAAGGGACCCAAGgtagatgttc ... attctatcagGGGCGTTTCAGGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCT
EST: ATTTTCGAGAGATGCGTGTAGGTGATTGTCTGGCTGTAAAGGGACCCAAG GGGCGTTTCAAGTATCAAGTTGGTCAAGTTAGGGCATTTGGGATGCTTGCTEST: gi|33407387|gb|CF213014.1|CF213014
genomic: ATTTTCGAGAGATGCGTGTAGGTGATTATCTGGCTGTAAAGGGACCCAAGgtagatgttc ... attctatcagGGGCGTTTCAGGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCT
EST: ATTTTCGAGAGATGCGTGCAGTTGATTATCTGGCTGTAAAGGGACCCAAG GGGCGTTTCAAGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCT
genomic: ATTTTCGAGAGATGCGTGTAGGTGATTATCTGGCTGTAAAGGGACCCAAGgtagatgttc ... attctatcagGGGCGTTTCAGGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTATCCACAAGGAAGGATGTCACATCATTTTCGAGAGATGCGTGTAGGTGATTATCTGGCTGTAAAGGGACCCAAGgtagatgttctcttgctttcatattaacttcgttagactggtttttggttgcatgcttgttataagattgaattgtgccccattccatgaggcagtggta
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