Sequence
atgc intronic sequence ATGC exonic sequenceCTTGAGGCAGCTTGGTGCCTTACAAATATTGCAGCTGGAAAACCAGAAGAAACAAAAGCTTTGGTGCCTGCATTACCACTGCTTATTGCTCATTTGGGAGgtttgtaatggtttcggcatttcccttttgatatgaatgattttctctttcttcttacaagtaaaattttgatcaaccttttgagctgaaaggtctaaga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g02290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g06470.1 (Oryza sativa), 5'ss of exon 4
CTTGAGGCAGCTTGGTGCCTTACAAATATTGCAGCTGGAAAACCAGAAGAAACAAAAGCTTTGGTGCCTGCATTACCACTGCTTATTGCTCATTTGGGAGgtttgtaatggtttcggcatttcccttttgatatgaatgattttct-----------ctttcttcttacaagtaaaattttgatcaaccttttgagctgaaaggtctaaga------------------------------------------------------------------------------------------
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CTAGAGGCAGCTTGGTGCCTTACAAACATAGCAGCTGGGGAACCAGAAGAAACAAAATCCTTGCTGCCTGCTCTACCATTGCTTATTGCTCACCTTGGTGgttagtt-tcatctc--tcttgttggttgaaattaaataattttcttcaatgctcatcttcattcccattaggaagatattgctatatgttcctgtatgcgtttctcaagaatgatgtttgtagatatttttctactatttagtttgaaatcagagctttgactatgctaaaaatttaattgagctacctatgttggttag
upper sequence: Vv08s0040g02290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G20090.1 (Glycine max), 5'ss of exon 4
CTTGAGGCAGCTTGGTGCCTTACAAATATTGCAGCTGGAAAACCAGAAGAAACAAAAGCTTTGGTGCCTGCATTACCACTGCTTATTGCTCATTTGGGAGgtttgtaatggtttcggcatttccctttt------gatatgaatgattttctctttcttcttacaagtaaaattttgatcaaccttttgagctgaaaggtctaaga
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CTTGAGGCAGCTTGGTGTCTCACAAATATTGCTGCAGGGAATCCAGAAGAAACAAAAGCTTTGTTGCCTGCATTGCCCTTGCTTATTGCTCATCTTGGGGgtgagtgatcactttgagattcttttgcatgtaaaaaaacaaattagtttttttatttttatttgtatataataaagataaagattaagag----aaattctta--
upper sequence: Vv08s0040g02290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G05740.1 (Glycine max), 5'ss of exon 4
CTTGAGGCAGCTTGGTGCCTTACAAATATTGCAGCTGGAAAACCAGAAGAAACAAAAGCTTTGGTGCCTGCATTACCACTGCTTATTGCTCATTTGGGAGgtttgtaatggtttcggcatttcccttt------tgatatgaatgattttctctttcttct-----tacaagtaaaattttgatcaaccttttgag----ctgaaaggtctaaga-----------------------------------
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----AGGCTGCTTGGTGTCTCACAAATATTGCTGCAGGGAATCCAGAAGAAACAGAAGCTCTGTTGCCTGCATTGCCCTTGCTTATTGCTCATCTTGGGGGTGAgtgatcactttaagattcttttgcatgtaaagaaatgaattagttttttatttttctctgtatataataaagataaagataaagattaagaggaattcttatagtctaaattcttaaagcattataagatatatattatgtaaaag
upper sequence: Vv08s0040g02290.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G03070.1 (Arabidopsis thaliana), 5'ss of exon 4
CTTGAGGCAGCTTGGTGCCTTACAAATATTGCAGCTGGAAAACCAGAAGAAACAAAAGCTTTGGTGCCTGCATTACCACTGCTTATTGCTCATTTGGGAGgtttgtaatggtttcggcatttcccttttgatatgaatgattttctctttcttcttacaagtaaaattttgatcaaccttttgagctgaaaggtctaaga
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CTTGAGTCAGCTTGGTGTCTTACCAACATTGCTGCTGGAAAACCTGAAGAAACAAAAGCTCTATTACCTGCATTGCCGTTACTCATTGCTCACCTTGGAGgtttgttgtact---ggccaaccaagtctgttatta------ctctattgtttttgttggattagatttcatatga--ttccaagtttata--ttcag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714602|gb|FC063574.1|FC063574EST: AACAAAAGCTTTGTTGCCTGCATTACCACTGCTTATTGCTCATTTGGGAG AAA-GAGTTCCC-TCCTGT-GCTGA-CAGTGTGCATGG-CGT-GGGAA
genomic: AACAAAAGCTTTGGTGCCTGCATTACCACTGCTTATTGCTCATTTGGGAGgtttgtaatg ... tattgtgtagAAAAGAGTTCCCCTCCTGTTGCTGAGCAGTGTGCATGGGCGTTGGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGAGGCAGCTTGGTGCCTTACAAATATTGCAGCTGGAAAACCAGAAGAAACAAAAGCTTTGGTGCCTGCATTACCACTGCTTATTGCTCATTTGGGAGgtttgtaatggtttcggcatttcccttttgatatgaatgattttctctttcttcttacaagtaaaattttgatcaaccttttgagctgaaaggtctaaga
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