Sequence
atgc intronic sequence ATGC exonic sequenceTCTACTCAGTGTCATTGAGGCAGCAATTACTAGATCTTGGGAAGAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTGTGTTAATAGCAGgcaaggcctgaacttgattatcaccttaacacttttttataaatggataattgttgattgtgctcttgtgagttggtaattttgaattgtctgtaatgtg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 4
TCTACTCAGTGTCATTGAGGCAGCAATTACTAGATCTTGGGAAGAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTGTGTTAATAGCAGgcaaggcctgaacttgattatcaccttaacactttt-ttataaatggataattgttgattgtgctcttgtgagttggtaattttgaattgtctgtaatgtg-
||||||||||||||||||| |||||||||| ||| |||| || ||||||||||||||||||||||||||||||||||||| ||| |||| |||||||| | | | || ||| ||| |||| | || ||| | || | | ||| | | || || | | | |||||
TCTACTCAGTGTCATTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTCTGTCAATAACAGgcaagatttaattatccaatccattgtaatgttttaattatgagtgt-taacttttctcagaattgttgcgtggctttatttgccagt-gctagtaattaca
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G20240.1 (Glycine max), 5'ss of exon 4
TCTACTCAGTGTCATTGAGGCAGCAATTACTAGATCTTGGGAAGAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTGTGTTAATAGCAGgcaaggcctgaacttgattatcaccttaacacttttttataaatggataattgttgattgtgctcttgtgagttggtaattttgaattgtctgtaatgtg
| |||||||||||| |||| || ||||||| ||| |||| || ||||||||||||||||||||||| ||||||||||||| ||| |||| ||||||| ||| | || | | || || | || | || | | | | ||| | |||||| | | | |
TTTACTCAGTGTCACTGAGACAACAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTACAACAAAGATGGTTCTgtcaataacaggcaacatttgatccc--ttgtgatgttt---tttgctcctagtgccactttttctcaaaattgttgcatgacctaactattttgc-tagcttttg-----
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G05890.1 (Glycine max), 5'ss of exon 4
TCTACTCAGTGTCATTGAGGCAGCAATTACTAGATCTTGGGAAGAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTGTGTTAATAGCAGgcaaggcctgaacttgattatcaccttaacacttttttataaatggataattgttgattgtgctcttgtgagttggtaattttgaattgtctgtaatgtg
| |||||||||||| |||| || ||||||| ||| |||| || ||||||||||||||||||||||| ||||||||||||| ||| |||| ||||||| ||| | | | | || |||| | | | | || || | | ||| | | | | || | |
TTTACTCAGTGTCACTGAGACAACAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTACAACAAAGATGgttctgtcaataacaggcaacatttgatccc--tcgtgatgtt-----ttttgcttctagtgtcagtttttcttaaaattgttgcatgacgtaactattttgctagc---------
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G36480.1 (Glycine max), 5'ss of exon 4
TCTACTCAGTGTCATTGAGGCAGCAATTACTAGATCTTGGGAAGAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTGTGTTAATAGCAGgcaaggcctgaacttgattatcaccttaacacttttttataaatggataat-tgttgattgtgctcttgtgagttggtaattttgaattgtctgtaatgtg
||||||||||||||||||| |||||||||| ||| |||| || |||| ||| ||||||| |||||| |||| |||||||| ||| |||| |||||||| | || |||| | ||| | || | || | || | |||| | | | ||| |||| || | ||| |
TCTACTCAGTGTCATTGAGACAGCAATTACAGGATGTTGGTAAAAAGCCTGTCGGGGCCCTGCATTACAACAGAGATGgttctgtcaataacaggcaag------atttaattacc----caacccattgtaatgttttaattgtgtgttaacttttctcagaattgttgcatgacttaatttgctag-------
upper sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G37160.1 (Arabidopsis thaliana), 5'ss of exon 4
TCTACTCAGTGTCATTGAGGCAGCAATTACTAGATCTTGGGAAGAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTGTGTTAATAGCAGgcaaggcctgaacttgattatcaccttaacacttttttataaatggataattgttgattgtgctcttgtgagttggtaatttt-gaattgtctgtaatgtg-
||||| | || ||| | || ||||| || | ||| |||| |||||||||||| | || |||||||||||||||||||||| ||| |||| |||||||| | ||| | || | ||||||| | | | | ||||| || | | ||| | |||| ||| | ||||
TCTACACCGTATCACTAAGACAGCAGTTGCAGGATGTTGGTAAGAAGCTTGTTAGTGCTCAGCATTATAACAAAGATGGTTCTGTAAATAACAGgcaagcttttttctttctgtaaacttcttttctttttttttctttctctgcttt--attgttctagtatttgttaacattttttgaaattgaaataatcaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30301922|gb|CB978716.1|CB978716EST: GCCCAGCATTATAACAAAGATGGTTGTGTTAATAGCAG CCGTTGTACTAGCATTGCATGGGTCCCTGATGGTGATGGTGCTTTCGTTGT
genomic: GCCCAGCATTATAACAAAGATGGTTGTGTTAATAGCAGgcaaggcctg ... tttttaatagCCGTTGTACTAGCATTGCATGGGTCCCTGATGGTGATGGTGCTTTCGTTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTACTCAGTGTCATTGAGGCAGCAATTACTAGATCTTGGGAAGAAGCTTGTTGGGGCCCAGCATTATAACAAAGATGGTTGTGTTAATAGCAGgcaaggcctgaacttgattatcaccttaacacttttttataaatggataattgttgattgtgctcttgtgagttggtaattttgaattgtctgtaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgga