1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTATTTGTATCTAAGTAAATTGGTGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAGgtaacttaattttttccatttatctctacatttatgtgctaaacattttttcacactaaaagaattgcttattgaatggattctggatttgatgcag
species | Vitis vinifera |
transcript | Vv08s0040g00530.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAG TTCCTTTTCTCTCCTATATTTATTGGAGTTTTCTTATCTACATTGGTAACTEST: gi|349832651|gb|FQ422009.1|FQ422009
genomic: TGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAGgtaacttaat ... tttgatgcagTTCCTTTTCTCTCCTATATTTATTGGAGTTTTCTTATCTACATTGGTAACT
EST: TGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAG TTCCTTTTCTCTCCTATATTTATTGGAGTTTTCTTATCTACATTGGTAACTEST: gi|349826193|gb|FQ415998.1|FQ415998
genomic: TGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAGgtaacttaat ... tttgatgcagTTCCTTTTCTCTCCTATATTTATTGGAGTTTTCTTATCTACATTGGTAACT
EST: TGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAG TTCCTTTTCTCTCCTATATTTATTGGAGTTTTCTTATCTACATTGGTAACTEST: gi|351021697|gb|FQ437082.1|FQ437082
genomic: TGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAGgtaacttaat ... tttgatgcagTTCCTTTTCTCTCCTATATTTATTGGAGTTTTCTTATCTACATTGGTAACT
EST: TGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAG TTCCTTTTCTCTCCTATATTTATTGGAGTTTTCTTATCTACATTGGTAACTEST: gi|349826476|gb|FQ418567.1|FQ418567
genomic: TGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAGgtaacttaat ... tttgatgcagTTCCTTTTCTCTCCTATATTTATTGGAGTTTTCTTATCTACATTGGTAACT
EST: TGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAG TTCCTTTTCTCTCCTATATTTATTGGAGTTTTCTTATCTACATTGGTAACTEST: gi|351022549|gb|FQ447071.1|FQ447071
genomic: TGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAGgtaacttaat ... tttgatgcagTTCCTTTTCTCTCCTATATTTATTGGAGTTTTCTTATCTACATTGGTAACT
EST: TGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAG TTCCTTTTCTCTCCTATATTTATTGGAGTTTTCTTATCTACATTGGTAACTEST: gi|351027727|gb|FQ446894.1|FQ446894
genomic: TGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAGgtaacttaat ... tttgatgcagTTCCTTTTCTCTCCTATATTTATTGGAGTTTTCTTATCTACATTGGTAACT
EST: TGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAG TTCCTTTTCTCTCCTATATTTATTGGAGTTTTCTTATCTACATTGGTAACTEST: gi|351013605|gb|FQ429746.1|FQ429746
genomic: TGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAGgtaacttaat ... tttgatgcagTTCCTTTTCTCTCCTATATTTATTGGAGTTTTCTTATCTACATTGGTAACT
EST: TGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAG TTCCTTTTCTCTCCTATATTTATTGGAGTTTTCTTATCTACATTGGTAACT
genomic: TGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAGgtaacttaat ... tttgatgcagTTCCTTTTCTCTCCTATATTTATTGGAGTTTTCTTATCTACATTGGTAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTTGTATCTAAGTAAATTGGTGACAATTCCTGGAGCATCAGGTGCTTTCTTGCGGCTTCTACTTGATCAGgtaacttaattttttccatttatctctacatttatgtgctaaacattttttcacactaaaagaattgcttattgaatggattctggatttgatgcag
- - - - - - - - - - - - - - - - - GGAGCA