Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATCATTTCGGTTATTCTAATAGTATACTGCTTTATAGCAGTATGGTTTGTTGGCGGGCTTACAGTTTTTCATTTCTATCTGATTTGCACCAACCAGgtaaccttctttctcaacttgctacttccattatttagaaactagatgtggatccaaacaaggccttatttgtgtgtttcttattacattctgcttcctgtctgtagttctaattcatacctagtccattctgatctttgcttttttcacag

Basic information

species Vitis vinifera
transcript Vv08s0040g00370.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00370.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G27420.1 (Glycine max), 5'ss of exon 3
TGATATCATTTCGGTTATTCTAATAGTATACTGCTTTATAGCAGTATGGTTTGTTGGCGGGCTTACAGTTTTTCATTTCTATCTGATTTGCACCAACCAGgtaaccttctttctcaacttgctacttccattat------ttagaaactagatgtggatccaaacaaggccttatttgtgtgtttcttattacattctgcttcctgtctgtagttctaattcatacctagtccattctgatctttgcttttttcacag
 |||||||| || |||| ||| || ||||| ||||| |||||  | |||||||| || ||||| |||||||||||| | ||| ||||||  || |||||||||  ||  ||  |   ||   |   |  ||| |       || || |||    |||||  | |  |      |||      | | | | |   ||    ||                                                        
CGATATCATATCAGTTACTCTCATTGTATATTGCTTCATAGCTATTTGGTTTGTGGGAGGGCTAACAGTTTTTCATCTTTATTTGATTTCGACTAACCAGgtattctctttctttttctaattctatatattgtatgcttctataagctatggatggatggacattaa---caattcaaacatctatgagttggtttcttttt-------------------------------------------------------