Sequence
atgc intronic sequence ATGC exonic sequenceGTGACTGGTGGGTCACTTGAGGAATCAAAGGAAGCTCTTGCAATTGCAGAAACAGATGgtgtttgcctatacctcattgtcttcccaatatttgtcttgctttctgtactgttctttatgattaattttctaaattattttctcctagagatgggttttcattggttggtttcttgtttgtctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0032g01170.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G38780.1 (Glycine max), 5'ss of exon 4
GTGACTGGTGGGTCACTTGAGGAATCAAAGGAAGCTCTTGCAATTGCAGAAACAGATGgtgtttgcctatacctcattgtcttcccaatatttgtcttgctttctgtactgttctttatgattaattttctaaattattttctcctagagatgggttttcattggttggtttcttgtttgtctcag
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GTAACTGGTGGGTCTCTAGAAGAATCAAGGGAGGCACTTGCCATTGCGGAAACAGATGgtttgtcattttctcttgatgactttcaaatgcagaatgtggatttt-tactaat-ttgatgatttattgatcaa-ctatag----------------------------------------------
upper sequence: Vv08s0032g01170.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G52390.2 (Arabidopsis thaliana), 5'ss of exon 4
GTGACTGGTGGGTCACTTGAGGAATCAAAGGAAGCTCTTGCAATTGCAGAAACAGATGgtgtttgcctatacctcattgtcttcccaatatttgtcttgctttctgtactgttctttatgattaattttctaaattattttctcctagagatgggttttcattggttggtttcttgtttgtctcag
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GTAACTGGTGGGTCATTGGAAGAATCAAGAGAAGCTCTTGCAATTGCAGAGACTGATGgtttgtttgttttatagatctttttttcagaaagtttttagtcttttagaagtttttgattgatgtacattttttgcag-------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161710738|gb|FC060303.1|FC060303EST: TGGGTCACTTGAGGAATCAAAGGAAGCTCTTGCAATTGCAGAAACAGATG GAAGGTTTTTCTGTACAGTGGGGGTGCACCCAACCAGATGCAAA
genomic: TGGGTCACTTGAGGAATCAAAGGAAGCTCTTGCAATTGCAGAAACAGATGgtgtttgcct ... tttgtctcagGAAGGCTTTTCTGTACAGTGGGGGTGCACCCAACCAGATGCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGACTGGTGGGTCACTTGAGGAATCAAAGGAAGCTCTTGCAATTGCAGAAACAGATGgtgtttgcctatacctcattgtcttcccaatatttgtcttgctttctgtactgttctttatgattaattttctaaattattttctcctagagatgggttttcattggttggtttcttgtttgtctcag
- - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG