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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCTTGCTAAGTATCATACACACTTTGCTGGATCAAGCACGACAAGATGAAATGCAAATTATTGGATGCCAGACACTGTTTGACTTTGTAAATAATCAGgttgggcttgtcagtgattatacatttcatggttgtcatgtatttattcaccaattacaggattttggcttcaaacataatttaggattttggcttcacatatgattttgtttttgagcttgcaggtttctccctactggaaattgtggctgattttatatgactgaattttgcag

Basic information

species Vitis vinifera
transcript Vv08s0007g08350.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g08350.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G29390.1 (Glycine max), 5'ss of exon 4
TAGCTTGCTAAGTATCATACACACTTTGCTGGATCAAGCACGACAAGATGAAATGCAAATTATTGGATGCCAGACACTGTTTGACTTTGTAAATAATCAGgttgggcttgtcagtgattataca-tttcatggttgtcatgtatttattcaccaattacaggattttggcttcaaacataatttaggattttggcttcacatatgattttgtttttgagcttgcaggtttctccctactggaaattgtggctgattttatatgactgaattttgcag
||||||||||||||| || |||||  ||||||||||| |||| |  |||||||||  |||||| ||||| || |  |||||||| ||||||||||||||||||||  |      |  |  |||| || || ||||    |  | |        ||||| |  |||     | ||    |   | |   | |  ||||    |   |     |    |||| | ||  ||| |      | | |                                  
TAGCTTGCTAAGTATTATTCACACCCTGCTGGATCAATCACGGCTGGATGAAATGAGAATTATAGGATGTCAAATTCTGTTTGATTTTGTAAATAATCAGgttggattcactgtttctactacaattacaaggtttaagttcagtggactgaaaattata--attcaatttccatttcttgataactttctaagctttgactggaaaaacat----gagcctacatattttttatattttgcag---------------------------------

upper sequence: Vv08s0007g08350.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G41830.1 (Arabidopsis thaliana), 5'ss of exon 5
TAGCTTGCTAAGTATCATACACACTTTGCTGGATCAAGCACGACAAGATGAAATGCAAATTATTGGATGCCAGACACTGTTTGACTTTGTAAATAATCAGgttgggcttgtcagtgattatacatttcatggttgtcatgtatttattcaccaattacaggattttggcttcaaacataatttaggattttggcttcacatatgattttgtttttgagcttgcaggtttctccctactggaaattgtggctgattttatatgactgaattttgcag
| | || ||||| |   | ||  || |  |||||||| | ||||||||||||||||||||  ||||||| ||| | || || || ||||||| |||||||||  |  |         ||| | |||  || |   ||   |||  |  |||  ||  |||| |  |  ||   |  ||  || | ||           |||||||  |  |     ||| ||   | |||     ||   |  ||   |                           
TGGTTTCCTAAGGACGGTGCAAGCTCTTTTGGATCAAACTCGACAAGATGAAATGCAAATAGTTGGATGTCAGTCTCTTTTCGAATTTGTAATTAATCAGgtcagcttc--------ttacatattcgatagaattctcttat--agccac--atgtcagggtgctatctgatagaatggttaaaga-----------catatgaaataatgaaatagcctgattgattcatgtgaccaaatttttcag---------------------------