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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTTGCTGGTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcattttgccttattatggaaaatttctgatttcacgtaatcctcctatttattttcagactggaaagatgacatgtgaacacttgcattggtagcag

Basic information

species Vitis vinifera
transcript Vv08s0007g07960.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g07960.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G32480.1 (Glycine max), 5'ss of exon 4
GACCTTGCTGGTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcattttgccttattatggaaaat-ttctgatttcacgtaatcctcctatttattttcagactggaa-agatgacatgtgaacacttgcattggtagcag
||||||||||| || |||||||||||| | || ||||| || ||||| |||||||| ||||| || |  ||||    ||| ||  |   | ||||| ||||   ||||||       ||| ||     |     |  ||     | || |  |||    |      
GACCTTGCTGGAGATGTTGTTCAGAATCTTCAAGAGTTCTTTAGAACAATGTACAAGAAGgt-at-ttgttttaatatatgatatatggtattctgttttc---taatccattgtggtatatttgtgttcatttatgtggtgcttaaa-atgtgctacag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30297265|gb|CB974059.1|CB974059
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTCCAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|351015510|gb|FQ447339.1|FQ447339
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|349825564|gb|FQ419481.1|FQ419481
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|30297223|gb|CB974017.1|CB974017
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|352794289|gb|FQ479531.1|FQ479531
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|351028672|gb|FQ446345.1|FQ446345
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|351054628|gb|FQ456825.1|FQ456825
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGCACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|110686833|gb|EE063714.1|EE063714
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|349827514|gb|FQ422382.1|FQ422382
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|110701183|gb|EE078491.1|EE078491
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCCAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|351048863|gb|FQ431528.1|FQ431528
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|351023284|gb|FQ432667.1|FQ432667
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
EST: gi|351040488|gb|FQ434621.1|FQ434621
EST:     GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAG                         GTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT
genomic: GTGAAGTTGTTCAGAATTTGCATGAGTTTTTCAGAACCATGTACAAAAAGgtcatatcat ... ttggtagcagGTTACTGAGGCAGATATTGAAGAGTTTGAAGCAAACTACAGAGGATCTGAT