Sequence
atgc intronic sequence ATGC exonic sequenceGTAAGGAGAACCCGGATCAGCGAAAGAATGAGGAAACTACAAGAGCTTGTCCCAAACATGGACAAGgtagaatttctatgaaattttcctctctggttggataaattttttcaatgtttcaattcaacttctaattaatatctgtgaattcttcttggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07810.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G12150.1 (Glycine max), 5'ss of exon 5
GTAAGGAGAACCCGGATCAGCGAAAGAATGAGGAAACTACAAGAGCTTGTCCCAAACATGGACAAGgtagaatttctatga--aattttcctctctggttggataaatttt---ttcaatgt--ttcaattcaacttctaatt-aatatctgtgaattcttcttggcag
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GTGAGAAGAACTCGGATCAGTGAAAGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAGgtaagacacataaaagcacgtttgattgtggaatatgtaaattatatgtcacatgcgatgtagttgtattggaaatttaacattcttga--tgctctttgcag
upper sequence: Vv08s0007g07810.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G29830.1 (Glycine max), 5'ss of exon 5
GTAAGGAGAACCCGGATCAGCGAAAGAATGAGGAAACTACAAGAGCTTGTCCCAAACATGGACAAGgtagaatttctatgaa---attttcctctctggttggataaattttttca---atgtttcaattcaacttctaa--ttaatatctgtga-attcttc-ttggcag
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GTGAGAAGAACTCGGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTCCCACACATGGATAAGgtaagagacacataagcacatttgatttctggaatatgtaaattatgttacatatggtgtagttgtggttggaaagttaacattcttgatgctcttaattggcag
upper sequence: Vv08s0007g07810.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G32600.1 (Glycine max), 5'ss of exon 4
GTAAGGAGAACCCGGATCAGCGAAAGAATGAGGAAACTACAAGAGCTTGTCCCAAACATGGACAAGgtagaatttctatgaaattttcctctctggttggataaattttttcaatgtttcaattcaacttctaattaatatctgtgaattcttcttggcag
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GTGAGAAGAAGTCGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGACAAGgtaagattcattacacaattttatttgccctatgattaatagtgt--attttgtgtttggaatgctaac--atttctggag----ttattggcag
upper sequence: Vv08s0007g07810.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G42280.2 (Arabidopsis thaliana), 5'ss of exon 3
----------------------------------GTAAGGAGAACCCGGATCAGCGAAAGAATGAGGAAACTACAAGAGCTTGTCCCAAACATGGACAAGgtagaatttctatgaaattttcctctctggttggataaattttttcaatgtttcaattcaacttctaattaatatctgtgaattcttcttggcag
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AGCCTTTCCTAAGAAATCTTGTCAATTGTGTCAGGTAAGAAGAACGCGGATAAGCGAGCGAATGAGGAAGTTACAAGAGCTTGTTCCTAACATGGACAAGgtacagttttcaggaacttccttgtaatgacttt-tgatcataaacaaattgttaaatgatgttgttttctttatgttttaacag----------
upper sequence: Vv08s0007g07810.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G42280.1 (Arabidopsis thaliana), 5'ss of exon 4
GTAAGGAGAACCCGGATCAGCGAAAGAATGAGGAAACTACAAGAGCTTGTCCCAAACATGGACAAGgtagaatttctatgaaattttcctctctggttggataaattttttcaatgtttcaattcaacttctaattaatatctgtgaattcttcttggcag
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GTAAGAAGAACGCGGATAAGCGAGCGAATGAGGAAGTTACAAGAGCTTGTTCCTAACATGGACAAGgtacagttttcaggaacttccttgtaatgacttt-tgatcataaacaaattgttaaatgatgttgttttctttatgttttaacag----------
upper sequence: Vv08s0007g07810.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ22469 (Selaginella moellendorffii), 5'ss of exon 3
GTAAGGAGAACCCGGATCAGCGAAAGAATGAGGAAACTACAAGAGCTTGTCCCAAACATGGACAAGgtagaatt-tctatgaaattttcctctctggttggataaattttttcaatg----tttcaattcaacttctaattaatatctgtgaattcttcttggcag----------
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GTCCGCCGGACGAGGATTAGCGAACGCATGCGAAGGTTGCAAGAGCTAGTCCCAAACATGGACAAGgtaacttcctctcttcgatctcgatctagtcgttgctagatcttttcattcgcatctttgctttgatttccacgggagttcttctatactttggctaaagtttctaacag
upper sequence: Vv08s0007g07810.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ11695 (Selaginella moellendorffii), 5'ss of exon 2
GTAAGGAGAACCCGGATCAGCGAAAGAATGAGGAAACTACAAGAGCTTGTCCCAAACATGGACAAGgtagaatt-tctatgaaattttcctctctggttggataaattttttcaatg----tttcaattcaacttctaattaatatctgtgaattcttcttggcag----------------------------
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GTCCGCCGGACGAGGATTAGCGAACGCATGCGAAGGTTGCAAGAGCTAGTCCCAAACATGGACAAGgtaacttcctctcctcgatctcgatcttctcattgctagatcttttcattcgcatctttgctttgatttccacgggagttcttctatactttggctaaagtttctaacagtctttggctgtgatccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110363334|gb|EC926912.1|EC926912EST: TCAGCGAAAGAATGAGGAAACTACAAGAGCTTGTCCCAAACATGGACAAG CAAACCAACACTGCAGACATGTTAGATTTGGCCGTGGAATACATTAAGGAC
genomic: TCAGCGAAAGAATGAGGAAACTACAAGAGCTTGTCCCAAACATGGACAAGgtagaatttc ... ttcttggcagCAAACCAACACTGCAGACATGTTAGATTTGGCCGTGGAATACATTAAGGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAAGGAGAACCCGGATCAGCGAAAGAATGAGGAAACTACAAGAGCTTGTCCCAAACATGGACAAGgtagaatttctatgaaattttcctctctggttggataaattttttcaatgtttcaattcaacttctaattaatatctgtgaattcttcttggcag
- - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA