Sequence
atgc intronic sequence ATGC exonic sequenceTTCGCAAAGCTTTGACCACATGGGCAAGATGGGTTGATGCCAATGTAAATCCAGCAAAGTCTCTGGTTTTCTTCCGAGGTTATTCTTCCTCCCATTTCAGgtaggctgaaacaaccacccacctttcaataacaattttgattgatcagcattgaagctttaaaaacaatgcagctatttcaaaacttaatcaattctcttgctacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g06680.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G28840.1 (Glycine max), 5'ss of exon 6
TTCGCAAAGCTTTGACCACATGGGCAAGATGGGTTGATGCCAATGTAAATCCAGCAAAGTCTCTGGTTTTCTTCCGAGGTTATTCTTCCTCCCATTTCAGgtaggctgaaacaaccacccacctttcaataacaattttgattgatcagcattgaagcttta-aaaacaatgcagctatttcaaaacttaat-caattctcttgctacag
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TTCGAAGGGCTATAACAACTTGGAGTAGATGGATTGATGCCAACATAAATCAATCGAAGTCTATGGTATTCTTCAGAGGCTATTCTGCTTCACATTTCAGgta--------caat-actcgtgtttgggtga-atgtttgcaaaattgattttgaggtgaagtaatatgtggtggatatttttatactaaaagcaatttatccaacacaa
upper sequence: Vv08s0007g06680.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G06700.1 (Arabidopsis thaliana), 5'ss of exon 4
TTCGCAAAGCTTTGACCACATGGGCAAGATGGGTTGATGCCAATGTAAATCCAGCAAAGTCTCTGGTTTTCTTCCGAGGTTATTCTTCCTCCCATTTCAGgtaggctgaaacaaccacccacctttcaataacaattttgattgatcagcattgaagctttaaaaacaatgcagctatttcaaaacttaatcaattctcttgctacag
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TTCGTAAAGCTTTGACTACATGGGGTCGATGGGTTGAGAAGAATGTGAATCCGGCAAAGTCCCTCGTTTTCTTTCGGGGCTATTCCGCATCCCATTTCAGgtaaacgcagac-------cgtctttaaat--ctgcttatgtagagtctcaatca---tttaggtctagtctaa--atcttgacacttttggaattgttttgcag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71863474|gb|DT012529.1|DT012529EST: CCAGCAAAGTCTCTGGTTTTCTTCCGAGGTTATTCTTCCTCCCATTTCAG TGGTGGCCAGTGGAATTCTGGAGGTCAGTGTGACGGCGAGACCGAGCCCAT
genomic: CCAGCAAAGTCTCTGGTTTTCTTCCGAGGTTATTCTTCCTCCCATTTCAGgtaggctgaa ... cttgctacagTGGTGGCCAGTGGAATTCTGGAGGTCAGTGTGACGGCGAGACCGAGCCCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCGCAAAGCTTTGACCACATGGGCAAGATGGGTTGATGCCAATGTAAATCCAGCAAAGTCTCTGGTTTTCTTCCGAGGTTATTCTTCCTCCCATTTCAGgtaggctgaaacaaccacccacctttcaataacaattttgattgatcagcattgaagctttaaaaacaatgcagctatttcaaaacttaatcaattctcttgctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG