Sequence
atgc intronic sequence ATGC exonic sequenceCTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAAgtaagttgttaatgcaggctttcatgagcagataatgtcctttgaatttacggtcttacttgtaatgattgaataattgcttttggtgacttccctgttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g58580.1 (Oryza sativa), 5'ss of exon 3
----CTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAAgtaagttgttaatgcaggctttcatgagcagataatgtcctttgaatttacggtcttacttgtaatgattgaataattgcttttggtgacttccctgttg
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ACAGCTCTTCCTGCTCTTCCTGTCTTTCTCCTTGGCTGTTGAAGCACTACATGCATTTATGCAAGATGAGTCTGAGCATAAgtaaatgccttttcctttttgtttagtgta-atataatcccaatcgttttggctaatattattattcttctaaaactaaaatatatatatatactttcag
upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g58580.5 (Oryza sativa), 5'ss of exon 1
-----------------------CTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAAgtaagttgttaatgcaggctttcatgagcagataatgtcctttgaatttacggtcttacttgtaatgattgaataattgcttttggtgacttccctgttg
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TGCTTCTTCTTTGTTCTAGACAGCTCTTCCTGCTCTTCCTGTCTTTCTCCTTGGCTGTTGAAGCACTACATGCATTTATGCAAGATGAGTCTGAGCATAAgtaaatgccttttcctttttgtttagtgta-atataatcccaatcgttttggctaatattattattcttctaaaactaaaatatatatatatactttcag
upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G017365_T09 (Zea mays), 5'ss of exon 3
----CTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAAgtaagt--tgttaatgcaggctttcatgagcagataatgtcctttgaatttacggtcttacttgtaatgattgaataattgcttttggtgacttccctgttg-------------------
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ACAGCTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAAgtaagtgccatttatgtcaaatgtctt---cagatgggatggtagctgtttctgctgttactagtctttctccactgccttttcatgctgacaccttatcttctaaaaaactgtcttccag
upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G017365_T08 (Zea mays), 5'ss of exon 4
CTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAAgtaagt--tgttaatgcaggctttcatgagcagataatgtcctttgaatttacggtcttacttgtaatgattgaataattgcttttggtgacttccctgttg-------------------
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CTGTTTCTATTGTTCCTGTCTTTCTCCTTGGCTGTTGAAGCATTACATGCATTTATGCAAGATGAATCGGAGCACAAgtaagtgccatttatgtcaaatgtctt---cagatgggatggtagctgtttctgctgttactagtctttctccactgccttttcatgctgacaccttatcttctaaaaaactgtcttccag
upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G30140.1 (Glycine max), 5'ss of exon 4
CTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAAgtaagttgtt------aatgca-ggctttcatgagcagataatgtcctttgaatttacggtcttacttgtaatgattgaataattgcttttggtgacttccctgttg
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CTGTTTCTTTTGTTTATGTCATTCTCCCTAGCAGTTGAGGCACTTCATGCATTCATACAAGATGAATCAGAGCACAAgtaagtttgtgcccacaatgaatgtcgtctgtcagtattttat-tacttacaattaaatattttacatatccagcaacaaaaaagatagacagtgattttt------
upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G33030.1 (Glycine max), 5'ss of exon 4
CTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAAgtaagttgttaatgcaggctttcatgagcagataatgtcctttgaatttacggtcttacttgtaatgattgaataattgcttttggtgacttccctgttg
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CTATTTCTTTTGTTTATGTCATTCTCCCTAGCAGTTGAGGCACTTCATGCATTCATACAAGATGAATCAGAGCACAAgtaagtttgtacacacaatgactgttgtctgtcagtatgtaattacttacaaattacaattaagtattttacatatccagcaacaaagagataggcagtg
upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G12100.1 (Arabidopsis thaliana), 5'ss of exon 4
CTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAAgtaagttgttaatgcaggctttcatgagcagataatgtcctttgaatttacggtcttacttgtaatgattg-aataattg----cttttggtgacttccctgttg---------------------------
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CTGTTCCTTATGTTCATGTCATTCTCCTTAGCTGTGGAAGCTCTTCATGCATTTATACAAGATGAATCAGAGCATAAgtaagttgatattttcacaaatgacatgcctaggagtttctatatatat-ctctagcacttactaagtttacagtacttgttccctcttgttcctttcagtagtgtgatttactgagatttcctttatgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720919|gb|FC070323.1|FC070323EST: TTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAA GCATTACTTGATTGTTTCGGCTGTAACAAATTTATTGGTGAATCTTATTGG
genomic: TTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAAgtaagttgtt ... cttgttttagGCATTACTTGATTGTTTCGGCTGTAACAAATTTATTGGTGAATCTTATTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGTTTCTGTTGTTTATGTCATTCTCCTTGGCTGTGGAAGCACTTCATGCATTCATACAAGATGAATCTGAGCACAAgtaagttgttaatgcaggctttcatgagcagataatgtcctttgaatttacggtcttacttgtaatgattgaataattgcttttggtgacttccctgttg
- - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagataa