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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCTTCATCTTTGAGAAATATACCAGTAGTGATCATGTCATCTGAGAATGTGCCTTCAAGGATCACCAGgtaaaactcaaaaacaagaattgggaattcctttccaattcctttccatggaaacacaatctggaagactgattctcaggtgaaattgactaaatgggtgctatcattacag

Basic information

species Vitis vinifera
transcript Vv08s0007g05390.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g05390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g72330.1 (Oryza sativa), 5'ss of exon 4
GAATCTTCATCTTTGAGAAATATACCAGTAGTGATCATGTCATCTGAGAATGTGCCTTCAAGGATCACCAGgtaaaactcaaaaacaagaattgggaattcctttccaattcctttccatggaaacacaatctggaagactgattctcaggtgaaattgactaaatgggtgctatcattacag
| ||| || || ||||   | |||||||| ||||||||||| ||||||||||||||| ||||||||| ||||| |  || ||||       |  |   | || ||    |  |||  | ||||||      |||     ||| | |    |  | | |  ||| |    | | |   |     
GGATCATCTTCATTGAAGGACATACCAGTTGTGATCATGTCTTCTGAGAATGTGCCTGCAAGGATCAACAGgtgag-ctgaaaattctatctgagctgtccccttattttagcttatcctggaaattattgctg-----ctggtccatgaggcatactc-ctacaaatctaccaaggt-----

upper sequence: Vv08s0007g05390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G28570.1 (Glycine max), 5'ss of exon 4
GAATCTTCATCTTTGAGAAATATACCAGTAGTGATCATGTCATCTGAGAATGTGCCTTCAAGGATCACCAGgtaaaactcaaaaacaagaattgggaattcctt-----tccaattcctttccatggaaacacaatc------tggaagactgattctcaggtgaaattgactaaatgggtgctatcattacag
|||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||| | ||||||| |    | ||| |    ||    ||| ||     |  | ||  ||| | ||  ||||   |       || ||  ||||||   |  ||||| || | |||  |               
GAATCTTCATCTTTGAGAAACATACCAGTGGTGATTATGTCATCTGAAAATGTGCCTTCAAGGATTAACAGgtaagaaa-gagaactatttctgtactttctttatttatttattttttttacctgtgaacatttttatgaagtgaaattctgattaatatctgaaactggcaaaacag---------------

upper sequence: Vv08s0007g05390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G31320.2 (Glycine max), 5'ss of exon 4
GAATCTTCATCTTTGAGAAATATACCAGTAGTGATCATGTCATCTGAGAATGTGCCTTCAAGGATCACCAGgtaaaactcaaaaacaagaattgggaattcctttccaattcctttccatggaaacacaatctggaagactgattctcaggtgaaattg-actaaatgggt---gctatcattacag
|||||||||||||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||| | ||||||| |   |  |  || | ||  | | |  |||  ||    |    |    || |    ||   |   |  || | | ||||||||    | |||   |    ||  ||  ||||
GAATCTTCATCTTTGAGAAACATACCGGTGGTGATTATGTCATCTGAAAATGTGCCTTCAAGGATTAACAGgtaaga---aggagaaatatttcagtactttttttaaaaaaat----aaaataaaattccctatgaacatttttatgacgtgaaattctgatgaatatctcaaactggcaaaacag

upper sequence: Vv08s0007g05390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G57040.1 (Arabidopsis thaliana), 5'ss of exon 4
GAATCTTCATCTTTGAGAAATATACCAGTAGTGATCATGTCATCTGAGAATGTGCCTTCAAGGATCACCAGgtaaaactcaaaaacaagaattgggaattcctttccaattcctttccatggaaacacaatctggaagactgattctcaggtgaaattgactaaatgggtgctatcattacag----------
||||| ||| |||| ||| ||||||||||||| |||||||| || ||||| || ||| |||| |||| ||||||||    ||| |    |  |  ||| |         ||||  |  |    |      | |  |   || |||  |  | | |||| | | ||    | ||    |               
GAATCATCAGCTTTTAGAGATATACCAGTAGTTATCATGTCCTCAGAGAACGTTCCTGCAAGAATCAGCAGgtaaag---aaagattgaacctatgaagtttgagtttgttccccttta---gattgtggtttcaatctctcatttccccg-ggaattaattgaaaattttcttgtgtcttgatcatgaacag