1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAAATTGGCTGTTGTATCAAACTTTGATACTCGATTAAGACCCGTTCTGCAGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatttttttctccctcaatttttacaatgatggattcatgacagtgtcagcttaaagtgagcaattatttcctaccttttttgctgttgtttaaaaatgcttgtccctctctctcttggaaaacag
species | Vitis vinifera |
transcript | Vv08s0007g05350.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAA GTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTGEST: gi|22014371|gb|BQ799405.1|BQ799405
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTG
EST: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAA GTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTGEST: gi|110395612|gb|EC961279.1|EC961279
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTG
EST: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAA GTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTGEST: gi|110429697|gb|EC996199.1|EC996199
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTG
EST: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAA GTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTGEST: gi|22014482|gb|BQ799516.1|BQ799516
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTG
EST: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAA GTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTGEST: gi|26258618|gb|CA809681.1|CA809681
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTG
EST: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAA GTTGAAGCAGAGAAGCCAAATCCTACCATATTTCTAAAAACCTTGTGAGTTEST: gi|33403871|gb|CF209498.1|CF209498
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGC-TTGTGAGTT
EST: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAA GTTGAAGCAGAGAAGCCAAATCCTCCAATATTTCTAAAAGCTTGCGAGTTGEST: gi|22011451|gb|BQ796485.1|BQ796485
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTG
EST: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAA GTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTGEST: gi|71871882|gb|DT020937.1|DT020937
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTG
EST: AGGCATTGAATTGCAATTACTGGTTTGATGCTGTGGCAGTGTCAGCTGAA GTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTGEST: gi|110725316|gb|EE101677.1|EE101677
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTG
EST: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAACTGAA GTTGAAGCNAAA-AA-CCAAATCCTACA-TATTTCTAEST: gi|110366475|gb|EC930383.1|EC930383
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGC-AGAGAAGCCAAATCCTACAATATTTCTA
EST: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAA GTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTGEST: gi|33409774|gb|CF215401.1|CF215401
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTG
EST: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAA GTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTGEST: gi|26264895|gb|CA815958.1|CA815958
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTG
EST: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAA GTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTGEST: gi|33409859|gb|CF215486.1|CF215486
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTG
EST: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAA GTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTGEST: gi|34320237|gb|CF372991.1|CF372991
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTG
EST: AGGCATTGAATTGCAATTACTGGTTTGATGCTGTGGCAGTGTCAGCTGAA GTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTGEST: gi|22014205|gb|BQ799239.1|BQ799239
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTG
EST: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAA GTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTGEST: gi|71877965|gb|DT027020.1|DT027020
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTG
EST: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAA GTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTEST: gi|32265433|gb|CD716286.1|CD716286
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGCAGAGAAGCCAAATCCTACAATATTTCT
EST: ACTGGTTTGATGCTGTGGCAGTGTCAGCTGAA GTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTGEST: gi|110712773|gb|EE088110.1|EE088110
genomic: ACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTTGAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTGTGAGTTG
EST: AGGCATTGAATTGCAATCACTGGGTTGATGCTGTGGCAGTGTCAACTGAA GTTTGA-GCAAANAAACCNAATCCTACAATATTTCTAAAAGCTTG
genomic: AGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatt ... tggaaaacagGTT-GAAGCAGAGAAGCCAAATCCTACAATATTTCTAAAAGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAATTGGCTGTTGTATCAAACTTTGATACTCGATTAAGACCCGTTCTGCAGGCATTGAATTGCAATCACTGGTTTGATGCTGTGGCAGTGTCAGCTGAAgtaagtgatttttttctccctcaatttttacaatgatggattcatgacagtgtcagcttaaagtgagcaattatttcctaccttttttgctgttgtttaaaaatgcttgtccctctctctcttggaaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA