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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGATTGCTGTAATTGGCGGCATCCACACCGCCACATTGGCCAAGCTCTCTGCCAAGAGCCAGGAGGCTCTTTCAGAGGCGGGGAACATTGCAGAACAGgtgagaagggttccaaattttctataattttctgcaattttctgcattttgttgattttaatgtgtgggaaacagagatggaactatgtttttgcatctgggtatcactgatttcgggctgaattgcag

Basic information

species Vitis vinifera
transcript Vv08s0007g05060.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g05060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G34080.1 (Glycine max), 5'ss of exon 4
TCTGATTGCTGTAATTGGCGGCATCCACACCGCCACATTGGCCAAGCTCTCTGCCAAGAGCCAGGAGGCTCTTTCAGAGGCGGGGAACATTGCAGAACAGgtgagaagggttccaaattttctataattttctgcaattttctgcattttgttgattttaatgtgtgggaaacagagatggaactatgtttttgcatctgggtatcactgatttcgggctgaattgcag
| |||| ||||| ||||| ||||| ||||||||||| ||||| |||||||||| |||||||||||| ||||||||  | || || |||||||  ||||||||||||     | || | | |  | ||  ||  | || ||| |  |||   ||   ||| |  ||          |  |    |  ||||| |||||    |                           
TATGATAGCTGTGATTGGAGGCATTCACACCGCCACCTTGGCTAAGCTCTCTGGCAAGAGCCAGGAAGCTCTTTCTCAAGCTGGCAACATTGTGGAACAGgtgaga----cttcagagtata-acaaagttaagaaactttgttaattgcattttatttgaattggcattgcattacctattgcattgtttgtgcattgcag---------------------------

upper sequence: Vv08s0007g05060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G36820.1 (Glycine max), 5'ss of exon 4
TCTGATTGCTGTAATTGGCGGCATCCACACCGCCACATTGGCCAAGCTCTCTGCCAAGAGCCAGGAGGCTCTTTCAGAGGCGGGGAACATTGCAGAACAGgtgagaagggttccaaattttctataattttctgcaattttctgcattttgttgattttaatgtgtgggaaacagagatggaactatgtttttgcatctgggtatcactgatttcgggctgaattgcag
| |||| ||||| ||||| ||||| |||||| |||| ||||| ||||||||||  ||||||||||| ||||||||  | || || |||||||  |||||||||||||    || | |  |   ||| ||      || ||| ||   ||  |||  ||| || ||      |  |  ||   |  |  | ||    | || | ||  | |                   
TATGATAGCTGTGATTGGAGGCATTCACACCACCACCTTGGCTAAGCTCTCTGGTAAGAGCCAGGAAGCTCTTTCTCAAGCTGGCAACATTGTGGAACAGgtgagaa----tcaagaaatgacatagttgata--aactttttg---ttaattgcatttgatttg------attggcattacatcacctcttattgtttgtgcattgcag-------------------