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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGACCACAACCTATGAGGACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCTgtaagttttgtcgatcgccttcttttctgtgtactcaactttggcacattgttgatgtgcacattgttatttgttggatgctgcag

Basic information

species Vitis vinifera
transcript Vv08s0007g04960.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110386398|gb|EC950991.1|EC950991
EST:     AGGACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCT                         GAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGAC
genomic: AGGACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCTgtaagttttg ... gatgctgcagGAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGAC
EST: gi|110691149|gb|EE068923.1|EE068923
EST:     AGGACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCT                         GAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGAC
genomic: AGGACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCTgtaagttttg ... gatgctgcagGAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGAC
EST: gi|18459041|gb|BM437319.1|BM437319
EST:     AGGACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCT                         GAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGAC
genomic: AGGACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCTgtaagttttg ... gatgctgcagGAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGAC
EST: gi|32461311|gb|CD802485.1|CD802485
EST:     TCCACTGATCGTTTTCATCAGCCAATCCCATTAGCT                         G
genomic: TCCACTGATCGTTTTCATCAGCCAATCCCATTAGCTgtaagttttg ... gatgctgcag-
EST: gi|32461311|gb|CD802485.1|CD802485
EST:     TCCACTGATCGTTTTCATCAGCCAATCCCATTAGCT                         G
genomic: TCCACTGATCGTTTTCATCAGCCAATCCCATTAGCTgtaagttttg ... gatgctgcag-
EST: gi|32461311|gb|CD802485.1|CD802485
EST:     TCCACTGATCGTTTTCATCAGCCAATCCCATTAGCT                         G
genomic: TCCACTGATCGTTTTCATCAGCCAATCCCATTAGCTgtaagttttg ... gatgctgcag-
EST: gi|30328104|gb|CD011366.1|CD011366
EST:     ACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCT                         GAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGAC
genomic: ACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCTgtaagttttg ... gatgctgcagGAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGAC
EST: gi|30320614|gb|CD003876.1|CD003876
EST:     AGGACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCT                         GAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGAC
genomic: AGGACCTGCTCTTATCCACTGATCGTTTTCATCAGCCAATCCCATTAGCTgtaagttttg ... gatgctgcagGAAATGGTGGATTTTTTAGTTGATATATGGCATGAGGAAGGTCTCTATGAC