Sequence
atgc intronic sequence ATGC exonic sequenceGAGTGTTTGATGACTAGGATGCAAGAGATGTCATTGGATTACCATTTCACCGTGGAGCAGGAAGTGGGCTCCTCCACCTATGCCTTCTTTGGATTCAATGgtgattacccaagttccagaatgatttcgcttttctttttatttttttttttcctttttttaaaatttattgttcgaacttggaaggtgcttaaagattaactgagtgaacaaaggaactatatgctatggtaatggaaatacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G07560.1 (Glycine max), 5'ss of exon 5
GAGTGTTTGATGACTAGGATGCAAGAGATGTCATTGGATTACCATTTCACCGTGGAGCAGGAAGTGGGCTCCTCCACCTATGCCTTCTTTGGATTCAATGgtgattacccaagttccagaatgatttcgcttttctttttatttttttttttcctttttttaaaatttattgttcgaacttggaaggtgcttaaagattaactgagtgaacaaaggaactatatgctatggtaatggaaatacag
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GAATGTTTGATGACCAGGATGCAAGAGATGTCACTGGATTACCATTTCACTGTGGAACAAGAAGTGGGGTCTTGCACTTATGCCTTCTTTGGCTTCAACGgtaatcaatcatctatgaaaacaatttca----------------tccgttttccttttttaaaaagaataattgaattttttttaattagtagcaatgaaaaatagtgacaagga-----------------------------
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G21440.1 (Glycine max), 5'ss of exon 5
GAGTGTTTGATGACTAGGATGCAAGAGATGTCATTGGATTACCATTTCACCGTGGAGCAGGAAGTGGGCTCCTCCACCTATGCCTTCTTTGGATTCAATGgtgattacccaagttccagaatgatttcgcttttctttttattttttttt-------------ttcctttttttaaaatttattgttcgaac--ttggaaggtgctta----aagattaactgagtgaacaa-aggaactatatgctatggtaatggaaatacag
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GAATGTTTGATGACCAGGATGCAAGAGATGTCACTGGATTACCATTTCACTGTGGAACAAGAAGTGGGGTCTTGCACTTACGCCTTCTTTGGCTTCAACGgtaatcatctaa---taaaaacaatttcatccgttttccttttcttataaaagaaaaaaagaataattgattttaagtgcaatagtgaaaatgtttttattgtggttgtggcatgatgaatttagtaatttacaaccaatttttgcactcatataaatgatacag
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G34800.1 (Glycine max), 5'ss of exon 4
GAGTGTTTGATGACTAGGATGCAAGAGATGTCATTGGATTACCATTTCACCGTGGAGCAGGAAGTGGGCTCCTCCACCTATGCCTTCTTTGGATTCAATGgtgattacccaagttccagaatgatttcgcttttctttttatttt--tttttttcctttttttaaaatttattgttcgaacttggaaggtgcttaaag-attaactgagtgaacaaaggaactatatgctatggtaatggaaatacag
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GAATGTTTGATGACCAGAATGCAAGAGATGTCACTAGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTTGGTTTCAACGgtaat-----atgatgacaaatattttcactttatacaataaaaaaatcgaaatagattctgtccactttcttttatgaaaaaaaaaagaaacaacagcaacaac-------------------------------------------
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G37480.1 (Glycine max), 5'ss of exon 4
GAGTGTTTGATGACTAGGATGCAAGAGATGTCATTGGATTACCATTTCACCGTGGAGCAGGAAGTGGGCTCCTCCACCTATGCCTTCTTTGGATTCAATGgtga------ttacccaagttcca----gaatgatttcgcttttcttttta----tttttttttttcctttttttaaaat-----------ttattgttcgaacttggaaggt-gcttaaagattaactgagtgaacaaaggaactatatgctatggtaatggaaatacag---
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GAATGTTTGATGACCCGAATGCAAGAGATGTCACTAGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTTGGTTTCAACGgtaatatgcatgaccaatatttcactttatacaattaaaaaaatcgaaatagaatctttccattttccttttatgaaaaaaaaaacatggatttttgtgcaatagtggaagctagctcttttatgaaaatagaagatttagccaaatttttttgtactcttgtaaatacattag
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ17366 (Selaginella moellendorffii), 5'ss of exon 4
GAGTGTTTGATGACTAGGATGCAAGAGATGTCATTGGATTACCATTTCACCGTGGAGCAGGAAGTGGGCTCCTCCACCTATGCCTTCTTTGGATTCAATGgtgattacccaagttccagaatgatttcgcttttctttttatttttttttttcctttttttaaaatttattgttcgaacttggaaggtgcttaaagattaactgagtgaacaaaggaactatatgctatggtaatggaaatacag
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GAGTGCATGATGACACGGATGCAGGAGATGTCGCTGAGTTACCATTTTACCGTGGAGCAATCTGTGGGATCCGCAACCTATGCTTTCTTTGGATTCAATGgtaggtaataagctagctacagggtcacgcttacgaa---acgcttgctgtttgctacaacag----------------------------------------------------------------------------------
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ35401 (Selaginella moellendorffii), 5'ss of exon 4
GAGTGTTTGATGACTAGGATGCAAGAGATGTCATTGGATTACCATTTCACCGTGGAGCAGGAAGTGGGCTCCTCCACCTATGCCTTCTTTGGATTCAATGgtgattacccaagttccagaatgatttcgcttttctttttatttttttttttcctttttttaaaatttattgttcgaacttggaaggtgcttaaagattaactgagtgaacaaaggaactatatgctatggtaatggaaatacag
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GAGTGCATGATGACACGGATGCAGGAGATGTCGCTGAGTTACCATTTTACCGTGGAGCAATCTGTGGGATCCGCAACCTATGCTTTCTTTGGATTCAATGgtaggtaataagctagctacagggtcacgct------tacgaaacgcttgctgcttgctacaacag-------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34543461|gb|CF511693.1|CF511693EST: CGTGGAGCAGGAAGTGGGCTCCTCCACCTATGCCTTCTTTGGATTCAATG GGACAGCGGGTGTATGGAGAATTGCTGCACTGAACGAAGCTGGGGGATGGA
genomic: CGTGGAGCAGGAAGTGGGCTCCTCCACCTATGCCTTCTTTGGATTCAATGgtgattaccc ... ggaaatacagGGACAGCGGGTGTATGGAGAATTGCTGCACTGAACGAAGCTGGGGGATGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGTGTTTGATGACTAGGATGCAAGAGATGTCATTGGATTACCATTTCACCGTGGAGCAGGAAGTGGGCTCCTCCACCTATGCCTTCTTTGGATTCAATGgtgattacccaagttccagaatgatttcgcttttctttttatttttttttttcctttttttaaaatttattgttcgaacttggaaggtgcttaaagattaactgagtgaacaaaggaactatatgctatggtaatggaaatacag
- - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC