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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAGAGATATGACAGGAATCTTGCAGAGAACACTCTAAAGGCAATTAAGAAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcatatttgcctcatcattagtgtaagattatttttgcttcatactgaagtgtcaatgaaaatttctggcag

Basic information

species Vitis vinifera
transcript Vv08s0007g03850.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g03850.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G19410.2 (Glycine max), 5'ss of exon 2
CAGAGAGATATGACAGGAATCTTGCAGAGAACACTCTAAAGGCAATTAAGAAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgtt---cttcatatttgcctcatcatt--agtgtaagattatttttgcttcatactgaagtgtcaatgaaaatttctggcag-------------------
||||||||||||||||||||||||| |||||    || ||||| |||   |||||||| ||| |  |||| |  |||||||  | |||||||  |   |||||   |||    |    ||  | |||  | | | | | | || ||  | | |  ||   | |   ||       ||| ||                    
CAGAGAGATATGACAGGAATCTTGCTGAGAATGTCCTCAAGGCCATTCCAAAGATTGATAAAATCCGAGTCGCCAGGGAGGAGAAACACCATAAGAATAGgttattctttgactccatctttttatttcaatctgaaaattttattagtacgtggtgttttctttttgctctccgctgacattttgtgaaatctctcatag

upper sequence: Vv08s0007g03850.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA12G09090.1 (Glycine max), 5'ss of exon 4
CAGAGAGATATGACAGGAATCTTGCAGAGAACACTCTAAAGGCAATTAAGAAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgtt---------cttcatatttgcctcatcattag-------tgtaag----at-tatttttgcttcatactgaagtgtcaatg---aaaatttctggcag
| ||||||||||||||||||||||| |||||    || ||||| |||   |||||||| ||| | |||||    |||||||  | |||||||  |   |||||         || ||| |||   |  | ||  |       | ||||    || | ||||   ||    || |  || || |     |||| ||| | ||
CTGAGAGATATGACAGGAATCTTGCTGAGAATGTCCTCAAGGCCATTCCAAAGATTGATAAAATCAGAGTCACCAGGGAGGAGAAACACCATAAGAATAGgttattctttgactccatctttttattttaatctgaaagttttataagtaccatgtgttttctttttgctcttagctgacattttgcgaaatctctcgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26262309|gb|CA813372.1|CA813372
EST:     AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAG                         GATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
genomic: AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcata ... tttctggcagGATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
EST: gi|110401381|gb|EC967989.1|EC967989
EST:     AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAG                         GATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
genomic: AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcata ... tttctggcagGATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
EST: gi|71876723|gb|DT025778.1|DT025778
EST:     AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAG                         GATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
genomic: AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcata ... tttctggcagGATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
EST: gi|71890437|gb|DT039492.1|DT039492
EST:     AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAG                         GATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
genomic: AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcata ... tttctggcagGATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
EST: gi|110418414|gb|EC984567.1|EC984567
EST:     AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAG                         GATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
genomic: AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcata ... tttctggcagGATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
EST: gi|110400284|gb|EC966842.1|EC966842
EST:     AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAG                         GATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
genomic: AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcata ... tttctggcagGATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
EST: gi|351028971|gb|FQ434972.1|FQ434972
EST:     AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAG                         GATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
genomic: AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcata ... tttctggcagGATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
EST: gi|77587193|gb|DV222731.1|DV222731
EST:     AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAG                         GATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
genomic: AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcata ... tttctggcagGATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
EST: gi|71882405|gb|DT031460.1|DT031460
EST:     AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAG                         GATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
genomic: AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcata ... tttctggcagGATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
EST: gi|32459699|gb|CD800873.1|CD800873
EST:     AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAG                         GATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
genomic: AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcata ... tttctggcagGATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
EST: gi|71882718|gb|DT031773.1|DT031773
EST:     AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAG                         GATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
genomic: AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcata ... tttctggcagGATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
EST: gi|71881638|gb|DT030693.1|DT030693
EST:     AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAG                         GATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
genomic: AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcata ... tttctggcagGATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
EST: gi|71866642|gb|DT015697.1|DT015697
EST:     AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAG                         GATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
genomic: AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcata ... tttctggcagGATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
EST: gi|110375172|gb|EC940133.1|EC940133
EST:     AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAG                         GATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
genomic: AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcata ... tttctggcagGATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
EST: gi|349823493|gb|FQ414903.1|FQ414903
EST:     AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCACTCAG                         GATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
genomic: AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcata ... tttctggcagGATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
EST: gi|71872527|gb|DT021582.1|DT021582
EST:     AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAG                         GATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
genomic: AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcata ... tttctggcagGATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
EST: gi|77577264|gb|DV217342.1|DV217342
EST:     AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAG                         GATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA
genomic: AAGATTGACAAAGTTAGAGTAGATAGGGAGGCCAGACACCATGCGCTCAGgttcttcata ... tttctggcagGATGAAGGGAAAGAAAGCCAAGGAGCAAAGGGAGGCAGCAAAGGAACTGGA