Sequence
atgc intronic sequence ATGC exonic sequenceTTGGGCAATAAATTTAATGGCTGATGTTGCTCAAATGGAACATTTGAACAAGATGAATGCACGCAATGTGGCTATGGTGTTTGCACCAAACATGACTCAAgtgagtgagttattttcttggccaaaccacacgcttataactcctttgttgcttttagtgatatccaagtttcctgtttcctgacaggtggagagtatat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os11g05540.1 (Oryza sativa), 5'ss of exon 4
TTGGGCAATAAATTTAATGGCTGATGTTGCTCAAATGGAACATTTGAACAAGATGAATGCACGCAATGTGGCTATGGTGTTTGCACCAAACATGACTCAAgtgagtgagttattttcttggccaaaccacacgcttataactcctttgttgcttttagtgatatccaagtttcctgtttcctgacaggtggagagtatat
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GTGGGCAGTTAATTTAATGGCTGATGTTGTCCAAGAAGAACAGATAAACAAGATGAATGCTCGTAACATTGCTATGGTTTTTGCACCAAATATGACTCAGgtaa-tgcactgtcctaataataaacttatgatttta-agtgtggtcgatgcttactgtcatgcacatatgtaatgcag---------------------
upper sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os12g05900.1 (Oryza sativa), 5'ss of exon 4
TTGGGCAATAAATTTAATGGCTGATGTTGCTCAAATGGAACATTTGAACAAGATGAATGCACGCAATGTGGCTATGGTGTTTGCACCAAACATGACTCAAgtgagtgagttattttcttggccaaaccacacgcttataactcctttgttgcttttagtgatatccaagtttcctgtttcctgacaggtggagagtatat
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CTGGGCTGTTAATTTGATGGCTGATGTTGTCCAAGAAGAGCAAATAAACAAGATGAATGCGCGCAATATTGCCATGGTTTTTGCACCAAATATGACTCAGgt-agtgtgttatcctattg-----------cgatcatggtactgatatttcattaggtggattctaactgttgtcacacatgtaatgcag---------
upper sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G35480.1 (Glycine max), 5'ss of exon 4
TTGGGCAATAAATTTAATGGCTGATGTTGCTCAAATGGAACATTTGAACAAGATGAATGCACGCAATGTGGCTATGGTGTTTGCACCAAACATGACTCAAgt--gagtgagttattttcttggccaaaccacacgcttataactcctttgttgcttttagtgatatccaagtttcctgtttcctgacaggtggagagtatat------
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TTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGCAATATTGCAATGGTTTTTGCTCCAAACATGACTCAAgtaagagtaaatcattttct-------attgtaaatgtagtatacagtt-ttgctcttagccccaatttttgttattgaattcgtaaaagtcaacctcatcttattgg
upper sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G38120.1 (Glycine max), 5'ss of exon 4
TTGGGCAATAAATTTAATGGCTGATGTTGCTCAAATGGAACATTTGAACAAGATGAATGCACGCAATGTGGCTATGGTGTTTGCACCAAACATGACTCAAgtgag--tgagttattttcttggccaaaccacacgcttataactcctttgttgcttttagtgatatccaagtttcctgtttcctgacaggtggagagtatat------
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TTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGTAATATTGCAATGGTTTTTGCACCAAACATGACTCAAgtaagactaaatcatttt-ttgttgtaaatgta-gtatacggttc------tgctcttagccccaatttttgttattgagttcataccagtcaaactcatcttattgg
upper sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G08610.1 (Glycine max), 5'ss of exon 5
TTGGGCAATAAATTTAATGGCTGATGTTGCTCAAATGGAACATTTGAACAAGATGAATGCACGCAATGTGGCTATGGTGTTT-GCACCAAACATGACTCAAgtgagt-gagttattttcttggccaaaccacacgcttataactcctttgttgcttttagtgatatccaagtttcctgtttcctgacaggtggagagtatat-
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-TGGGGGATAAACCTTATGGCTGATGTTGCTCAACTGGAACATTTGAACAAGATGAATGCTCGTAATGTTGCAATGGTTTTTTGCACCAAACATGACTCAAgtaagtcaaaatcttgtttttattgtagtttttgtgattgtctccctca--aatcttggtttttgatttgttaccattttattcaaggcttaattaccaatt
upper sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 4
TTGGGCAATAAATTTAATGGCTGATGTTGCTCAAATGGAACATTTGAACAAGATGAATGCACGCAATGTGGCTATGGTGTTTGCACCAAACATGACTCAAgtgagtgagttattttcttggccaaaccacacgcttataactcctttgttgcttttagtgatatc---caagtttcctgtttcctgacaggtggagagtatat
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TTGGGCTATCAATCTAATGGCTGATGTTGTTGAGATGGAACAACTTAACAAGATGAATGCTCGAAACATTGCAATGGTTTTTGCACCTAACATGACTCAGgtaagttttttgaatgaatctctaaa--gattgtttgatgtgttcgtattttggtaaatgacatcagtcaaattgcag-------------------------
upper sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S159_36V6.1 (Physcomitrella patens), 5'ss of exon 5
TTGGGCAATAAATTTAATGGCTGATGTTGCTCAAATGGAACATTTGAACAAGATGAATGCACGCAATGTGGCTATGGTGTTTGCACCAAACATGACTCAAgtgagtgagttattttc--ttg-gccaaaccacacgcttataactcctttgttgct---tttagtgatatccaagtttcctgtttcctgacaggtggagagtatat--------------------------------------------------------------------------------
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CTGGGCTGTCAACCTGATGGCCGATGTTGTCGAGCACGAGGTTCTCAACAAAATGAATGCACGAAATATTGCAATGGTGTTTGCACCTAACATGACGCAGgtatgtgatgtcgctgcaattgtgcgcctccccaaacttgtgacacttttcttaccagacttgtagagattcggtcctgtagttagcagactctccgactagatttctacgtgatctaaggaagtatttgtgttaagcttgttatatgaagtgaataacatattaactatgattcattacttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33403330|gb|CF208957.1|CF208957EST: AGATGAATGCACGCAATGTGGCTATGGTGTTTGCACCAAACATGACTCAA ATGGCAGATCCCTTGACAGCCTTGATGTATGCAGTCCAAGTGATGAATTTT
genomic: AGATGAATGCACGCAATGTGGCTATGGTGTTTGCACCAAACATGACTCAAgtgagtgagt ... ttggttgcagATGGCAGATCCCTTGACAGCCTTGATGTATGCAGTCCAAGTGATGAATTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGGGCAATAAATTTAATGGCTGATGTTGCTCAAATGGAACATTTGAACAAGATGAATGCACGCAATGTGGCTATGGTGTTTGCACCAAACATGACTCAAgtgagtgagttattttcttggccaaaccacacgcttataactcctttgttgcttttagtgatatccaagtttcctgtttcctgacaggtggagagtatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggag