Sequence
atgc intronic sequence ATGC exonic sequenceTTGATGGGTTATTGGGTCCTTACTGGAAAGCAGTGGGTCTGGCCTTCAACTGTACTTTCCTCCTCTTTGGATCTGTCATTCAGCTGATAGCGTGTGCAAGgtaagatctttcttcagttcctcagctgatattggaaaaatctaatcttggatctgtttgctttaactgttttggttggttcttgatgagaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G42640.1 (Glycine max), 5'ss of exon 4
TTGATGGGTTATTGGGTCCTTACTGGAAAGCAGTGGGTCTGGCCTTCAACTGTACTTTCCTCCTCTTTGGATCTGTCATTCAGCTGATAGCGTGTGCAAGgtaaga--tctttcttcagttcctcagctgatattggaaaaatctaatcttggatctgtttgctttaac-----------tgttttggttggttcttgatg--agaacag
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TTGATGGGTTGCTGGGTCCGTATTGGAAAGCAGTGGGCTTAGCCTTCAACTGTACTTTCCTCCTCTTTGGATCTGTGATTCAGCTTATAGCATGTGCAAGgtaaagaccctttcttaatttctgcaaaaaaaatcgaggcaatcttgtataggtttgttctgattacacaacatcatttacactttttttggttcctgttgcaaaaacag
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G17810.1 (Glycine max), 5'ss of exon 5
TTGATGGGTTATTGGGTCCTTACTGGAAAGCAGTGGGTCTGGCCTTCAACTGTACTTTCCTCCTCTTTGGATCTGTCATTCAGCTGATAGCGTGTGCAAGgtaag--atctttcttcagttcctcagctgatattggaaaaatctaatcttggatctgtttgctttaactgt----------------tttggttggttcttgatg--agaacag
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TTGATGGGTTACTGGGTCCGTATTGGAAAGCGGTGGGGTTAGCCTTCAACTGTACTTTCCTCCTCTTTGGATCTGTGATTCAGCTTATAGCATGTGCAAGgtaaagaacctttcttaatttctgcaaaataatcaaattgggggcaatcttgtataggtttgttctgattacacaacatcttttgcactttttttggttcctgttgcaaaaacag
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G28310.1 (Glycine max), 5'ss of exon 4
TTGATGGGTTATTGGGTCCTTACTGGAAAGCAGTGGGTCTGGCCTTCAACTGTACTTTCCTCCTCTTTGGATCTGTCATTCAGCTGATAGCGTGTGCAAGgtaagatcttt-cttcagtt----------cctcagctgatattg---gaaaaatctaatcttggatctgtttgctttaa-ctgttttgg---ttggttctt-gatgagaacag
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TTGATGGGTTACTTGGTCCATATTGGAAAGCATTGGGGCTAGCCTTCAACTGTACTTTCCTCCTCTTTGGATCTGTGATACAGCTTATAGCATGTGCAAGgtgacatctttgcttcgattttaaaggcaacttgaagtaatatagagtgggcaacttgaagttgtttttcttttctctcatcttttttggttcttgcttctttgatccaaacag
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G09140.1 (Glycine max), 5'ss of exon 3
TTGATGGGTTATTGGGTCCTTACTGGAAAGCAGTGGGTCTGGCCTTCAACTGTACTTTCCTCCTCTTTGGATCTGTCATTCAGCTGATAGCGTGTGCAAGgtaagatcttt-cttcagttcctcagctgatattggaaaaatctaatcttggatctg--tttgctttaactgttttggttggttcttgatgagaacag---------------------------------------
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TTGATGGGTTACTTGGTCGATATTGGAAAGCAGTGGGGCTAGCCTTCAACTGTACTTTCCTCCTATTTGGATCTGTGATACAGCTTATAGCATGTGCAAGgtaacatctttgcttcgattattaaggcaac-ttgaagtaatctaaagtgggttctcgtcttgttacaacaaatttgatgcttttcttctttcttttctgttgctctttttttctttttttttttttttgagaacag
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G09100.1 (Glycine max), 5'ss of exon 4
TTGATGGGTTATTGGGTCCTTACTGGAAAGCAGTGGGTCTGGCCTTCAACTGTACTTTCCTCCTCTTTGGATCTGTCATTCAGCTGATAGCGTGTGCAAGgtaagatcttt-cttcagttcctcagctgatattggaaaaatctaatcttggatct-gtttgcttt---aactgttttggttggttcttgatgagaacag-------------------------------
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TTGATGGGTTACTTGGTCCATATTGGAAAGCCCTGGGGCTAGCCTTCAACTGTACTTTCCTTCTCTTTGGATCTGTGATACAGCTTATAGCATGTGCAAGgtagcacctttgcttcgatttttaaggcaac-ctggagtaatctaaagtgggttctcatctattttttcaacgaagttttttttttcttttctctcatcttttttgttgcttgcttctttgatgcaaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110685103|gb|EE063138.1|EE063138EST: TGTACTTTCCTCCTCTTTGGATCTGTCATTCAGCTGATAGCGTGTGCAAG TAACATATACTATATCAATGACAAATTGGATAAGAGGACATGGACTTACAT
genomic: TGTACTTTCCTCCTCTTTGGATCTGTCATTCAGCTGATAGCGTGTGCAAGgtaagatctt ... atgagaacagTAACATATACTATATCAATGACAAATTGGATAAGAGGACATGGACTTACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGATGGGTTATTGGGTCCTTACTGGAAAGCAGTGGGTCTGGCCTTCAACTGTACTTTCCTCCTCTTTGGATCTGTCATTCAGCTGATAGCGTGTGCAAGgtaagatctttcttcagttcctcagctgatattggaaaaatctaatcttggatctgtttgctttaactgttttggttggttcttgatgagaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT