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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTGTGAAAGTTCGACTTCAATCTGAAGGAAAATTGCCACCTGGTGTGCCAAGACGCTATTCCGGATCATTGAATGCTTATTCTACAATAGTGAGACAGgtggaacatcttgcccttatatgcatattatttattagtttctttataatttatttaagtttcatttgtttgatgtctttatccaattttactaatttgtatctaaaatttag

Basic information

species Vitis vinifera
transcript Vv08s0007g01700.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G42220.1 (Glycine max), 5'ss of exon 3
-CCTTGTGAAAGTTCGACTTCAATCTGAAGGAAAATTGCCACCTGGTGTGCCAAGACGCTATTCCGGATCATTGAATGCTTATTCTACAATAGTGAGACAGgtggaacatcttgcccttatatgcatattatttattagtttctttataatttatttaagtttcatttgtttgatgtctttatccaattttactaatttgtatctaaaatttag
  |||||||||||| |||||||| | ||||||||||| || ||||||||||| || || || || |||||||| ||||||||||| ||||| |||||||||||        ||||   ||  |  |||| ||||   |   |    |  || |||| |    |  |  | ||    |  ||||           ||| || |||  |||   | 
ATCTTGTGAAAGTTAGACTTCAAGCAGAAGGAAAATTACCTCCTGGTGTGCCCAGGCGTTACTCTGGATCATTAAATGCTTATTCAACAATTGTGAGACAggta------tttgcatataacttgatatgatttgagaaaatgggaa-gatgtattcagtccttttcaggttataatagttatgt-------tcaatctgcatcctaaacaca-

upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G17380.1 (Glycine max), 5'ss of exon 3
CCTTGTGAAAGTTCGACTTCAATCTGAAGGAAAATTGCCACCTGGTGTGCCAAGACGCTATTCCGGATCATTGAATGCTTATTCTACAATAGTGAGACAGgtggaacatcttgcccttatatgcatattatttattagtttctttataatttatttaagtttcatttgtttgatgtctttatccaattttactaatttgtatctaaaatttag
 |||||||||||| |||||||| | |||||||||||||| ||||| ||||| |  ||||| || |||||||| ||||||||||| |||||  ||||||||||        ||||   |   |  |||| |||| | |   |    |  || |||| ||   |      ||| | ||  | |||   |||    ||| ||  ||  | |   ||
TCTTGTGAAAGTTAGACTTCAAGCAGAAGGAAAATTGCCTCCTGGCGTGCCCAAGCGCTACTCTGGATCATTAAATGCTTATTCAACAATTATGAGACAGgta------tttgcgtatgacttgatatgatttgtgaaaatgggaa-gatctattcaatcct------tttcaggttataatcagttttgttcaatctgcttcctacacacag

upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G14780.1 (Glycine max), 5'ss of exon 4
CCTTGTGAAAGTTCGACTTCAATCTGAAGGAAAATTGCCACCTGGTGTGCCAAGACGCTATTCCGGATCATTGAATGCTTATTCTACAATAGTGAGACAGgtggaacatcttgcccttatatgcatattatttattagtttctttataatttatttaagtttcatttgtttgatgtctttatccaattttactaatttgtatctaaaatttag
 ||||| |||||| |||||||| ||||||||||||| || |||||||| || || ||||| || ||||| || ||||||||||| ||||| |||||||||||         |||  |   ||  |  ||||  |  ||       | ||  |||||   |    || ||||| ||  | | |  | | | ||  |  |  |||||| |   ||
TCTTGTCAAAGTTAGACTTCAAGCTGAAGGAAAATTACCTCCTGGTGTTCCCAGGCGCTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAGgt------ctgtgcaatccaatataatttatggaagaga------aaaacatatttggttcattttagtttg-tgattatttttattctaacatacatcgatctaacacacag

upper sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G27120.1 (Glycine max), 5'ss of exon 3
CCTTGTGAAAGTTCGACTTCAATCTGAAGGAAAATTGCCACCTGGTGTGCCAAGACGCTATTCCGGATCATTGAATGCTTATTCTACAATAGTGAGACAGgtggaacatcttgcccttatatgcatattatttattagtttctttataatttatttaagtttcatttgtttgatgtctttatccaattttactaatttgtatctaaaatttag
 ||||| |||||| |||||||| | ||||||||||| || |||||||| || || || || || ||||| || ||||||||||| ||||| |||||||||||         |||  |   ||  |  ||||  |  ||       ||| ||  ||     || | |||||   | | ||||| | |   ||| |      |||||| |   ||
TCTTGTCAAAGTTAGACTTCAAGCAGAAGGAAAATTACCTCCTGGTGTTCCCAGGCGGTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAGgt------ctgtgctatccaatataatttatggaagagaaaaac-atatttggttcgg--tttagttgtt-attatttttattctaacctac-atcgatcatctaacacacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407547|gb|CF213174.1|CF213174
EST:     CAAGACGCTATTCCGGATCATTGAATGCTTATTCTACAATAGTGAGACAG                         GAGGGAGTTGGAGCTCTGTGGACTGGGCTTGGACCGAATGTAGCGAGAAAT
genomic: CAAGACGCTATTCCGGATCATTGAATGCTTATTCTACAATAGTGAGACAGgtggaacatc ... taaaatttagGAGGGAGTTGGAGCTCTGTGGACTGGGCTTGGACCGAATGTAGCGAGAAAT
EST: gi|33407463|gb|CF213090.1|CF213090
EST:     AATAGTGAGACAG                         GAGGGAGTTGGAGCTCTGTGGACTGGGCTTGGACCGAATGTAGCGAGAAAT
genomic: AATAGTGAGACAGgtggaacatc ... taaaatttagGAGGGAGTTGGAGCTCTGTGGACTGGGCTTGGACCGAATGTAGCGAGAAAT
EST: gi|161718697|gb|FC066335.1|FC066335
EST:     CAAGACGCTATTCCGGATCATTGAATGCTTATTCTACAATAGTGAGACAG                         GAGGGAGTTGGAGCTCTGTGGACTGGGCTTGGACCGAATGTAGCGAGAAAT
genomic: CAAGACGCTATTCCGGATCATTGAATGCTTATTCTACAATAGTGAGACAGgtggaacatc ... taaaatttagGAGGGAGTTGGAGCTCTGTGGACTGGGCTTGGACCGAATGTAGCGAGAAAT