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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGTGATATGGTTGCTGTTGCCAAGATTATGAATGCCACTCTTGTTCTTCCTTCTCTTGATCATGAGTCCTTTTGGACAGACCTGAGgtattgaatttgagtttattaattcttgttttagattaatttgaattctgatcttgcttttaactataattacatcctggtatttttgcag

Basic information

species Vitis vinifera
transcript Vv08s0007g01650.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01650.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G27000.1 (Glycine max), 5'ss of exon 3
ATATGTGATATGGTTGCTGTTGCCAAGATTATGAATGCCACTCTTGTTCTTCCTTCTCTTGATCATGAGTCCTTTTGGACAGACCTGAGgtattgaatttgagtttattaattcttgttttagattaatttgaattctgatcttgcttttaactata-attacatcc-tggtatttttgcag
||||||||||||||||| || || || || ||||||||||| ||||| ||||| |||||||| ||||| || |||||||| || |  |||||     |     ||||||           |  |||| | | |  ||   |    |||||  | | | || |  ||| |  ||| ||| |||
ATATGTGATATGGTTGCAGTGGCAAAAATAATGAATGCCACCCTTGTGCTTCCCTCTCTTGACCATGATTCATTTTGGACTGATCCAAGgtaaattttccctttttatttgagtggaacatcaattattatcacctcctgttactctttttccaaaatataatgtccctaatatattt-cag

upper sequence: Vv08s0007g01650.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G14950.1 (Glycine max), 5'ss of exon 3
ATATGTGATATGGTTGCTGTTGCCAAGATTATGAATGCCACTCTTGTTCTTCCTTCTCTTGATCATGAGTCCTTTTGGACAGACCTGAGgtattgaatttgagttta--ttaattcttgttttag--attaatttga-attctgatcttgcttttaactataattacatcctggtatttttgcag
||||| ||||||||||| || || || || ||||||||||| ||||| ||||||||||| || ||||| || |||||||| || |  |||||  |  || |  ||||  || | | |    |||   ||||||||   |   |   |||  |   || ||||||  |  |||  ||| ||| |||
ATATGCGATATGGTTGCAGTGGCAAAAATAATGAATGCCACCCTTGTCCTTCCTTCTCTAGACCATGATTCATTTTGGACTGATCCAAGgtaaagt-ttcgtatttaaattgaatgtaacattaattattaatttctcacgttaccctttttccaaaatataatatc--cctaatatattt-cag

upper sequence: Vv08s0007g01650.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G54100.1 (Arabidopsis thaliana), 5'ss of exon 4
ATATGTGATATGGTTGCTGTTGCCAAGATTATGAATGCCACTCTTGTTCTTCCTTCTCTTGATCATGAGTCCTTTTGGACAGACCTGAGgtattgaatttgagtttattaattcttgtt--ttagat----taatttgaattctgatcttgcttttaactataattacatcctggtatttttgcag
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||   ||||| ||||| || || ||||| |||| ||||| ||   | |   | |    | |||| ||     |||     ||  |   | || |   ||      | |   | || ||  || | |   |||||
ATATGTGACATGGTCGCTGTTGCCAAGATTATGAATGCAACTCTTGTTCTTCCTCTGCTTGACCATGAATCTTTCTGGACTGACCCGAGgtcttctctctatatcttggcactcttattgacctgataccacaagatatttactaaaaatgaagcagaatgccaataaatattgttttgagtgcag

upper sequence: Vv08s0007g01650.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G37980.1 (Arabidopsis thaliana), 5'ss of exon 4
ATATGTGATATGGTTGCTGTTGCCAAGATTATGAATGCCACTCTTGTTCTTCCTTCTCTTGATCATGAGTCCTTTTGGACAGACCTGAGgtattgaatttgagtttattaattcttgttttagat-taatttgaattctgatcttgcttttaactataattacatcctggtatttttgcag
|||||||| ||||||||||  || |||||||||||||| |||||||||||||||   || || ||||| || || ||||| |||| ||||| ||       |  | ||| | |||      |||| | ||   |     ||  | |  ||| |  | |  | | |  || |    ||||||
ATATGTGACATGGTTGCTGCAGCAAAGATTATGAATGCGACTCTTGTTCTTCCTCTACTCGACCATGAATCTTTCTGGACTGACCCGAGgtttt-------atctcatttactctataacgagatattatccaagaaaagaagtggaatttgaagagatattctttgtgat----ttgcag