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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGTAGCATTGTATTTAGCACAAGCTTTGGAATATTGCAGCAGTAAAGGACGGGCCTTGTATCATGATCTTAATGCCTACAGAGTCTTATTTGATCAGgtatattatttttacctatcttgtttttcaatttatttttatgactggctcttatttgtggggagtggttgacag

Basic information

species Vitis vinifera
transcript Vv08s0007g01520.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01520.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G26690.1 (Glycine max), 5'ss of exon 6
GAGGGTAGCATTGTATTTAGCACAAGCTTTGGAATATTGCAGCAGTAAAGGACGGGCCTTGTATCATGATCTTAATGCCTACAGAGTCTTATTTGATCAGgtata--ttatttttaccta----tcttgtttttcaatttatttttatgactggctcttatttgtggggagtggttgacag-----------
|||||| || || || ||||| |||||| | ||||||||||  ||||||||| |||  |||||||||||||| |||||||||||| |||| ||||||||||||||  |  | ||||   |    |      ||  || | |   || |  ||  || ||  |     ||| ||| |                
GAGGGTGGCTTTCTACTTAGCTCAAGCTCTAGAATATTGCACTAGTAAAGGAAGGGGTTTGTATCATGATCTCAATGCCTACAGAATCTTGTTTGATCAGgtataactggtgtttaataaatgcttccaagttctaactaaaccttgtttcttcctatttgtaacttggattggcttgtgatgtatcaacag

upper sequence: Vv08s0007g01520.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G15830.1 (Glycine max), 5'ss of exon 4
GAGGGTAGCATTGTATTTAGCACAAGCTTTGGAATATTGCAGCAGTAAAGGACGGGCCTTGTATCATGATCTTAATGCCTACAGAGTCTTATTTGATCAGgtata--ttatttttaccta----tcttgtttttcaatttatttttatgactggctcttatttgtggggagtggttgacag-----------
|||||| || || || ||||| |||||| | ||||||||||  ||||||||| |||  |||||||||||||| |||||||||||  |||| ||||||||||||||  |  |  |||   |    |      ||  || | | | || |  ||  || ||  |     ||| ||| |                
GAGGGTGGCTTTCTACTTAGCTCAAGCTCTAGAATATTGCACTAGTAAAGGAAGGGGTTTGTATCATGATCTCAATGCCTACAGGATCTTGTTTGATCAGgtataattggtggttaataaatgcttccaagttctaactaaatcttgtttcttcctatttgtaacttggactggcttgtgttgtatacacag

upper sequence: Vv08s0007g01520.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S9_348V6.1 (Physcomitrella patens), 5'ss of exon 4
GAGGGTAGCATTGTATTTAGCACAAGCTTTGGAATATTGCAGCAGTAAAGGACGGGCCTTGTATCATGATCTTAATGCCTACAGAGTCTTATTTGATCAGgtatatt---attt----ttacctatcttgtttttcaatttatttttatgactggct----cttatttgtggggagtggttgacag--------------
| | || || |||||| | ||||| ||||| ||  | ||   ||  |     |     ||||||||||| |||||||||||| | ||  ||||||||||||||| ||   |||     | | | ||    |   |||  | || | ||| |||  |         |||||     |  ||| | ||              
GCGAGTTGCTTTGTATATTGCACAGGCTTTAGATCACTGTGCCAACAGCAATCTACGTTTGTATCATGACCTTAATGCCTACCGGGTTCTATTTGATCAGgtattttccaattcaggctcaacaatgacctaaatcatgtcatctatatcactatcagcaatccgtttgtattacggagttcagagaatatattcattta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110687454|gb|EE064880.1|EE064880
EST:     GACGGGCCTTGTATCATGATCTTAATGCCTACAGAGTCTTATTTGATCAG                         GATGGTAATCCCAGACTGTCTTGCTTTGGCCTTATGAAGAATAGTAGAGAT
genomic: GACGGGCCTTGTATCATGATCTTAATGCCTACAGAGTCTTATTTGATCAGgtatattatt ... tggttgacagGATGGTAATCCCAGACTGTCTTGCTTTGGCCTTATGAAGAATAGTAGAGAT