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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGATCTCCAGAAACCGCAAATTGAGCTTGATTCAAAAGCTTGTGCAGCTGTCGGACAGAGTAGTCTCATGGCTCTGTATGATACTTTATTCAGCCAGgtgaaaaataatctatttactatcgcattctggaatatggaattgcattagaacatttattatggcttcagtacttacctatttatgggtagactaagctagttaccatttctaatgcattagccccagctggtggctgttgtggttaatttctttgaggtcctaatgaagcagtcgtctttatgcag

Basic information

species Vitis vinifera
transcript Vv08s0007g01060.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G24530.1 (Glycine max), 5'ss of exon 4
GGATGATCTCCAGAAACCGCAAATTGAGCTTGATTCAAAAGCTTGTGCAGCTGTCGGACAGAGTAGTCTCATGGCTCTGTATGATACTTTATTCAGCCAGgt-gaaaaataatctatttactatcgcattctggaatatggaattgcattagaacatttattatggcttcagtacttacctatttatgggtagactaagctagttaccatttctaatgcattagccccagctggtggctgttgtggttaatttctttgaggtcctaatgaagcagtcgtctttatgcag
   |||||| || || || |||   |||||||||  |||||| ||||| ||||| || |||||||||||||||||||| ||||||||  | ||||||||||| |  | | ||   | || ||     ||| |    |    ||||  ||   |   |||  | |  ||| | |   |||  ||||    ||  | |    |  |   |  |  | |||  ||    | || |  |   || ||  |                                           
TTCTGATCTTCAAAAGCCACAAGAAGAGCTTGATGGAAAAGCATGTGCGGCTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGCCAGgttggcacaaaactaagttgcttatttattatcatctc---aattcaatataagtgttttctcttcctttatttactac--atttgcatgtgaatttgttttttcctccatattgatg--ttgatacaagatttttcgtggtgcag-------------------------------------------

upper sequence: Vv08s0007g01060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G40770.1 (Glycine max), 5'ss of exon 4
GGATGATCTCCAGAAACCGCAAATTGAGCTTGATTCAAAAGCTTGTGCAGCTGTCGGACAGAGTAGTCTCATGGCTCTGTATGATACTTTATTCAGCCAGgtgaaaaataatctatttactatcgcattctggaatatggaattgcattagaacatttat-tatggcttcagtacttacctatttatgggtagactaagctagttaccatttctaatgcattagccccagctggtggctgttgtggttaatttctttgaggtcctaatgaagcagtcgtctttatgcag
    ||||| || || || |||   || ||||||   ||||| ||||||||||| ||||||||||||||||||||||| |||||||   | || || |||||| | | |||   ||| | |   ||||||   ||||||    |    | ||   | ||| | | ||   | ||| |    |  | |   |  | ||| ||| || |    ||||    |||       | || |   |  | || ||  |                                      
TTCAGATCTTCAAAATCCACAAGGAGATCTTGATGGGAAAGCATGTGCAGCTGTTGGACAGAGTAGTCTCATGGCTCTCTATGATATCATGTTTAGTCAGgtgcacactaa---attaagttgtgcattc---aatatgtccctaatcttgagtttgtatgttttgccataatacattagcaggtct---tttattaatctaattgcttcctcta---tattgatgt--ggtgatatatcatttgcttggtgcag----------------------------------

upper sequence: Vv08s0007g01060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G12240.1 (Glycine max), 5'ss of exon 4
GGATGATCTCCAGAAACCGCAAATTGAGCTTGATTCAAAAGCTTGTGCAGCTGTCGGACAGAGTAGTCTCATGGCTCTGTATGATACTTTATTCAGCCAGgt-gaaaaataatctatttactatcgcattctggaatatggaattgcattagaacatttattatggcttcagtacttacctatttatgggtagactaagctagttaccatttctaatgcattagccccagctggtggctgttgtggttaatttctttgaggtcctaatgaagcagtcgtctttatgcag
   |||||| || || || |||   |||||||||  |||||| || || ||||| || |||||||||||||||||||| ||||||||  | ||||||||||| |  | | ||   ||| | |  |  ||||   |  ||   | | ||||| ||    | || |   |||    ||||   ||||    |  || |  | |  || |    | |    |  |    |||| |  |   || ||  |                                           
TTCTGATCTTCAAAAGCCACAAGGAGAGCTTGATGGAAAAGCATGCGCGGCTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGCCAGgttggcacaaaactaattaagttgcttattcattatcatcacaatccattataag---tgttttcttttc----ctta---atttgcaagc-gattttgttgtttcctccatattg-acgctgataccagattttttgtggtgcag-------------------------------------------

upper sequence: Vv08s0007g01060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G16510.1 (Glycine max), 5'ss of exon 1
GGATGATCTCCAGAAACCGCAAATTGAGCTTGATTCAAAAGCTTGTGCAGCTGTCGGACAGAGTAGTCTCATGGCTCTGTATGATACTTTATTCAGCCAGgtgaaaaataatctatttactatcgcattc--tggaatatggaattgcattagaacatttat-tatggcttcagtacttacctatttatgggtagactaagctagttacca--tttctaatgcattagccccagctggtggctgttgtggttaatttctttgaggtcctaatgaagcagtcgtctttatgcag
    ||||| || || || |||   || ||||||   ||||| ||||||||||| || |||||||||||||||||||| ||||||    | || || |||||| | | |||   ||| | |  | |||||  |  ||||||    |    |  ||  | ||| | | ||  ||  |   |   |    ||  |  | ||| | | ||   |  ||||   |  |||      |    ||   |    ||||  |                                       
TTCGGATCTTCAAAATCCACAAGGAGATCTTGATGGGAAAGCATGTGCAGCTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATCTCATGTTTAGTCAGgtgcacactaa---attaagttgcacattcaattcaatatgtccctaatcttaaatttctatgttttgccacacaatacattaacacgtgtttt-attaatcaaatttgtatgtttcctctatattgatggtaatatgtcatttgcctggtgcag--------------------------------------