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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAATGTGTTCCCTCTGGGAAAGTCCTCCTTGATTCTACTGGGGTACGCTTTGAAAAGGATTCATTTGGAAAACAAAGTTTGTTACAGACTGAACAAGgtgattgcaattaaatctatttattaatctaatgaaacaactagagcatattcaatttgtttcagactaatgtagcaaagcctgaacttgatacag

Basic information

species Vitis vinifera
transcript Vv08s0007g00930.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71856186|gb|DT005241.1|DT005241
EST:     CTTTGAAAAGGATTCATTTGGAAAACAAAGTTTGTTACAGACTGAACAAG                         AGGGTCCAAAGCCTCAAAGCTCAAATTCAACTGGCGGAATGTTATCTCGTG
genomic: CTTTGAAAAGGATTCATTTGGAAAACAAAGTTTGTTACAGACTGAACAAGgtgattgcaa ... cttgatacagAGGGTCCAAAGCCTCAAAGCTCAAATTCAACTGGCGGAATGTTATCTCGTG
EST: gi|161715939|gb|FC067136.1|FC067136
EST:     CTTTGAAAAGGATTCATTTGGAAAACAAAGTTTGTTACAGACTGAACAAG                         AGGGTCCAAAGCCTCAAAGCTCAAATTCAACTGGCGGAATGTTATCTCGTG
genomic: CTTTGAAAAGGATTCATTTGGAAAACAAAGTTTGTTACAGACTGAACAAGgtgattgcaa ... cttgatacagAGGGTCCAAAGCCTCAAAGCTCAAATTCAACTGGCGGAATGTTATCTCGTG
EST: gi|110373916|gb|EC938364.1|EC938364
EST:     CTTTGAAAAGGATTCATTTGGAAAACAAAGTTTGTTACAGACTGAACAAG                         AGGGTCCAAAGCCTCAAAGCTCAAATTCAACTGGCGGAATGTTATCTCGTG
genomic: CTTTGAAAAGGATTCATTTGGAAAACAAAGTTTGTTACAGACTGAACAAGgtgattgcaa ... cttgatacagAGGGTCCAAAGCCTCAAAGCTCAAATTCAACTGGCGGAATGTTATCTCGTG