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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTTTCAGACTTATTGGAGTTGGACTATCTTTTTGGACATTTGCTACAGCTGGTTGTGGCTCTTCATTTGATTTTTGGTCTATTGCAATATTTCGCATgtaagtgtaaaaatgccagcgctttttattttattttattatttatttattattattatatttttataagttgaatttttcaatcattgctttctttcttaaactagactgtgagccatagtatgggtgatgtcctttcag

Basic information

species Vitis vinifera
transcript Vv07s0205g00120.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0205g00120.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os04g44430.1 (Oryza sativa), 5'ss of exon 3
ATCCTTTCAGACTTATTGGAGTTGGACTATCTTTTTGGACATTTGCTACAGCTGGTTGTGGCTCTTCATTTGATTTTTGGTCTATTGCAATATTTCGCATgtaagtgtaaaaatgccagcgctttttattttattttattatttatttattattattatatttttataagttgaatttttcaatcattgctttctttcttaaactagactgtgagccatagtatgggtgatgtcctttcag
|||||||||| |||||||| |||||| |||   | |||||  |||| |||||||||||||| |  ||||||||||| ||||| ||| | ||||  |||||||||||                |  | | || || ||     |   ||| |   | || || ||  |  | | |       ||  |||      ||  |   |||                                    
ATCCTTTCAGGCTTATTGGTGTTGGATTATTAGTCTGGACTATTGCAACAGCTGGTTGTGGGTGCTCATTTGATTTCTGGTCAATTACTATATGCCGCATgtaagtaccttgtcattgtgaataatcaattcatgtttcagatctgttacttaaaataaatcttactctgataatgacacgaacaattctccaattattgttacttag---------------------------------

upper sequence: Vv07s0205g00120.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G33680.1 (Glycine max), 5'ss of exon 4
ATCCTTTCAGACTTATTGGAGTTGGACTATCTTTTTGGACATTTGCTACAGCTGGTTGTGGCTCTTCATTTGATTTTTGGTCTATTGCAATATTTCGCATgtaagtgtaaaaatgccagcgctttttattttattttattatttatttattattattatatttttataagttgaatttttcaatcattgctttctttcttaaactagactgtgagccatagtatgggtgatgtcctttcag
|||| ||| | |||||||| |||||| | ||| ||||||| || || | |||||| |||||   ||| || ||||||||||||||||||||||  || |||||||||  ||  |    |  ||||  | ||| |   |   || ||   |||    | |  |   |||  |||| |||   | | |  ||  | ||| |  |                                       
ATCCATTCCGGCTTATTGGTGTTGGATTGTCTGTTTGGACTTTAGCGATAGCTGGATGTGGTAGTTCGTTCGATTTTTGGTCTATTGCAATATGCCGAATgtaagtg--aatgttttggtactttcaacttt-tcaaagccttaatactttaccggtttcatgccatattttga-tttgagattgacagcagtttttttgcag--------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34546196|gb|CF514428.1|CF514428
EST:     CCGGTTGTGGCTCTTCATTTGA-TTTTGATCTTANTGCAATATTTCGCAT                         GTTGGTTGGTGTTGGTGAGGCTTCATTCGTAAGTCTTGCAGCTCCATTTAT
genomic: CTGGTTGTGGCTCTTCATTTGATTTTTGGTC-TATTGCAATATTTCGCATgtaagtgtaa ... gtcctttcagGTTGGTTGGTGTTGGTGAGGCTTCATTCGTAAGTCTTGCAGCTCCATTTAT