Sequence
atgc intronic sequence ATGC exonic sequenceCAGCCACTCCTAAACAGATTCGAGAACTCATGCAAGTGGAAGGTCTCACTAACGATGAAGTAAAAAGCCATTTACAGgtgggtgttaacatagaagcctttctttttcagttttctttagtgggtcgtccttaaaagttcttgtccctctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0197g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G06230.1 (Glycine max), 5'ss of exon 5
CAGCCACTCCTAAACAGATTCGAGAACTCATGCAAGTGGAAGGTCTCACTAACGATGAAGTAAAAAGCCATTTACAGgtgggtgttaacatagaagcctttctttttcagttttctttagtgggtcgtccttaaaagttcttgtccctctgcag--------------------------
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TGGCCACTCCTAAACAGATTAGAGAACTGATGCAGGTGGAAGGCCTTACAAATGATGAAGTGAAAAGCCATTTGCAAgtgagagtttttttca---ttttttgtttttattctttggtatttgatcatattagaccacccacagcacaattaaagaacatatgttgaaacctaggtctcc
upper sequence: Vv07s0197g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G39040.1 (Glycine max), 5'ss of exon 4
CAGCCACTCCTAAACAGATTCGAGAACTCATGCAAGTGGAAGGTCTCACTAACGATGAAGTAAAAAGCCATTTACAGgtgggtgttaacatagaagcctttctttttcagttttctt-tagtgggtcgtccttaa---aagttcttgtccctctgcag-------------------
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TGGCCACTCCTAAACAGATTAGAGAACTGATGCAGGTGGAAGGCCTTACAAATGATGAAGTGAAAAGTCATTTGCAAgtgagtgttttttcatttttttttttgttggtatttgatcatattagaacacccacaacacaattaaagaaccatatgttgaaacctaggtctcttagtc
upper sequence: Vv07s0197g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G20520.1 (Glycine max), 5'ss of exon 4
CAGCCACTCCTAAACAGATTCGAGAACTCATGCAAGTGGAAGGTCTCACTAACGATGAAGTAAAAAGCCATTTACAGgtgggtgttaacata------gaagcctttctttttcagttttcttt-agtgggtcgtccttaaaagttcttgtccctctgcag--------------------
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TGGCCACTCCAAAGCAGATTAGAGAACTGATGCAGGTGGTAGGCCTCACAAATGATGAAGTGAAAAGCCATTTGCAAGTGAgtgtttatttatgtttggataaacttcacctaaaattttattggaaaagaaaataagaaaaaggtaaaatgaatttagtttttttatttccagttaaaat
upper sequence: Vv07s0197g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ15083 (Selaginella moellendorffii), 5'ss of exon 4
CAGCCACTCCTAAACAGATTCGAGAACTCATGCAAGTGGAAGGTCTCACTAACGATGAAGTAAAAAGCCATTTACAGgtgggtgttaacatagaagcctttctttttcagttttctttagtgggtcgtccttaaaagttcttgtccctctgcag
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TTGCCACTCCAAAGCAAATCCGAGAACTCATGAAGGTAGATGGTCTTACAAACGATGAAGTAAAAAGCCACCTCCAGgtgagtg---atccag-----tttcatctcgaagtcgattcgattgattttcttt-----tcgttggatcaa-gcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110361185|gb|EC924639.1|EC924639EST: TCATGCAAGTGGAAGGTCTCACTAACGATGAAGTAAAAAGCCATTTACAG AAATACAGACTTCACGTCCGGAGGATCCCATCCACTTCAGCTGCTCCTGCA
genomic: TCATGCAAGTGGAAGGTCTCACTAACGATGAAGTAAAAAGCCATTTACAGgtgggtgtta ... ccctctgcagAAATACAGACTTCACGTCCGGAGGATCCCATCCACTTCAGCTGCTCCTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGCCACTCCTAAACAGATTCGAGAACTCATGCAAGTGGAAGGTCTCACTAACGATGAAGTAAAAAGCCATTTACAGgtgggtgttaacatagaagcctttctttttcagttttctttagtgggtcgtccttaaaagttcttgtccctctgcag
- - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - TGGAAG