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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag

Basic information

species Vitis vinifera
transcript Vv07s0191g00060.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 5'ss of exon 4
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatat-tgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag
|| ||||||||||| || |||||||||||||||||||||||||| || ||||||||||| || || || | || || |||| ||||| || ||||| ||| | | || || | || | |||| ||| | | || | | ||| | |||| | || || | |||| | ||| ||
GGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCCTCCACAGGGgtagat------gtttaaga---tgcttacatttgaatg-gttatgtttcattttgctttgctggcaggtgttctaatgtgaatgttccatttttatactgacag-------------------------------------------------------------------------------

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 5'ss of exon 4
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag
|| ||||| ||||| || ||||| || ||||||||||| ||||| || |||||||||||||| || || | || || |||| ||||| |||||||| ||| || || | ||| || | | || ||| | | | | | ||| || || |
GGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggctctatttcta--ttattgactttcggatattcatgcccttgctctgaccatattatgttacttgtatggcag-----------------------------------------------------------------------------------------------------

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G054136_T06 (Zea mays), 5'ss of exon 3
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag
|||||||| ||||| || ||||| || |||||||||||||| || ||||||||||| ||||| |||| | || || || | |||||||| || || ||| ||||| | ||| || | || | | | | || | | || |||| | || | | ||| | |||| | |
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagact----tcctatttacagtgtactctca-gcaccatcttttactctgattcttatctgaacattcgatatcaattctgtagggactccctgcttcc------------------------------------------------------------------------------

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G054136_T02 (Zea mays), 5'ss of exon 3
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag
|||||||| ||||| || ||||| || |||||||||||||| || ||||||||||| ||||| |||| | || || || | |||||||| || || ||| ||||| | ||| || | || | | | | || | | || |||| | || | | ||| |
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagact----tcctatttacagtgtactctca-gcaccatcttttactctgattcttatctgaacattcgatatcaattctgtag---------------------------------------------------------------------------------------------

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM5G851698_T01 (Zea mays), 5'ss of exon 4
---------GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag
|||||||| ||||| || ||||| || |||||||| ||||| || ||||||||||| ||||| ||||| | || || |||| |||||||| ||||||||| ||||||| | | | | |
GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATgtgacaaacaaggcttcccaatgaagcaaggagttctgacttctggtcgtgtccgccttctgctccacagaggtatatagactgtatctccattgtactc-----------------------------------------------------------------------------------------------------------------------------------------------------------

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag
|||||||| ||||| || ||||| || |||||||| ||||| || ||||||||||| ||||| ||||| | || || |||| |||||||| ||||||||| ||||||| | | | | | | | | ||| || ||| |||| | |||| | ||| | | |
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccatt----gtactctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaatt-gtgtag--------------------------------------------------------------------------------------------

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G054136_T01 (Zea mays), 5'ss of exon 4
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag
|||||||| ||||| || ||||| || |||||||||||||| || ||||||||||| ||||| |||| | || || || | |||||||| || || ||| ||||| || | ||| | | | | || | | || |||| | || | | ||| |
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagact--tcctatgtccagtgtactctcaa---caccatcttttactctgattcttatctgaacattcgatatcaattctgtag---------------------------------------------------------------------------------------------

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 4
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgt-tggtaga---ctggtctactactttgtgcatatt-tagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag
|| ||||| |||||||| | ||||| |||||||| ||||| |||||||||||||||||||| ||||| || || || || |||| |||||||||| ||| || | | | | ||| ||||| | | | || | | || ||| || | | || | |||| | | ||| ||||||
GGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgtagctttaatgccctattttgttcttcctatattttctgcttagttctgtgcccttatgttttaatttttttaaatcaattc---catttttgtg-------------------------------------------------------------------------------------

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G31130.1 (Glycine max), 5'ss of exon 5
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag
|||||||| |||||||| | ||||| || ||||||||||| |||||||||||||| ||||| ||||||| || || || | || |||| || |||||| || || ||| | || || ||||| | || |||| | | | || |||| |||| || ||| || | | | |||| | | || | ||
GGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtatgt---ctattctgaagccttttg--tattttgctg-------attataaatacatcctaattattagtttgaagc--attcattcaact-cacgtgtt----ctatatttgaatt----------------------------------------------------------------

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G08210.1 (Glycine max), 5'ss of exon 4
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag
|| ||||| |||||||| | ||||| || ||||||||||| |||||||||||||| ||||| ||||||| || || || | || |||| || ||||||| || || ||| | || || | | || | | ||||| || | || |||| |||| || ||| || | | || ||| | |
GGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtttgt---ctattctgaagccttttgttttct-----gttgatta--taaataca--tcataattattagtttgaagc--attcattcaactcatgtgttttatatttggaat---------------------------------------------------------------------

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G09330.1 (Glycine max), 5'ss of exon 2
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag
|| ||||| |||||||| | || || |||||||| ||||| |||||||||||||||||||| || || || ||| | || || ||| |||| ||||||||| | |||| | ||| || ||| || || | ||| || | || | || | | | | ||||| || | | ||||
GGATATGTCTTCAAAATCACTGGTGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTAACACCTGGCTGTGTTCATCTTTTGCTCCACAGAGgtaga---actgtaatgaagcttca---attttttaatttgtgatcatttaacata-ttataatgtgtcatcatctgcagcatttgttcaaccctctttttgtgcat----------------------------------------------------------------------------

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag
|| || |||||||| || |||||||| ||||||||||||||||| |||||||| || ||||| || || ||||| || |||| ||| |||||||| ||||| |||| | | || | ||| | ||| | ||| | | ||||| || || | |||| ||| || | || |||| ||||| |||
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgt-actagatt---ccaccccattgataaaatt--------atacagct---tctctttttttcattaatcttctgtgttt-tttatttatgtgatctggtta---ttgtgtttag-------------------------------------------------------------------

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatat-tgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag
|| || || ||||| || | ||| || || || ||||||||||| ||||||||||||||||| |||| |||||||| || | ||| |||||||| ||||| || || ||| || | || ||| || | | ||| | | ||| | | | | ||| || | || | |||| | || | | | ||| |
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaacataa-taccttttcttacacttttgcatct---ataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgg----gtgaacag-------------------------------------------------------------------

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S253_38V6.1 (Physcomitrella patens), 5'ss of exon 3
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaat-taaatgcagtttttatatattgttttggagtttatttgggcattttctcctgt-tagcattgtggt-taatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattt---tgcttgaacag
|| ||||| ||||| || ||||||||||| |||||||| ||||| ||||||||||||||||| || || | |||||| || || || ||| | ||||||||| | || | | || ||| | | || || | | | || | ||||| | | | | ||| ||| || | | |||||| | |||| || | || | ||| || | | | | | | || || | |||
GGGTATGTCTTCAAGATCATGGGAGGCTGCGACAAGCAGGGTTTCCCAATGAAGCAGGGAGTTCTCACTCAAGGCCGTGTGCAGCTCCTGATGCACAGAGgtatggcgatagatagacacgggtgttggtgtcatgaagtaggctagtctgaacgagacatttatgtcctcgct---gctcctcttgtgcaacaagcgttgagtggggttgtggagtggtttgatgggctcagtatgggtgcgagaatttagttctcccttttgtaacgattattgtgtgttgttgcag

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattt---tgcttgaacag
|| ||||| ||||| || |||||||| || |||||||| ||||| || |||||||||||||| || || | |||||| || || || || | ||||||||| | || || || | || | | | | | ||| | || | ||| | | || | | || ||| || |||| || || | | | ||| | | |||| | || | | | | || || | |||
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgt--atggatataaacacagctg---gtatgtctgagt---agatcatttatcgcgtcactgcctcgctgtgcagaaagcgatgag---------------ttgcgttgaagtacctttgatgcactcagtacggccgcgaggtt--atgattttcatctgtaacgactcttgcctgttgtcgcag

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S311_33V6.1 (Physcomitrella patens), 5'ss of exon 3
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgct-cgatgcttgatgaaactaatacgaattggcattttgcttgaacag
|| || || ||||| || |||||||| ||||||||||| ||||| || ||||||||||| || |||||| || || || ||||| ||| | ||| ||||| | | | || | | | | | | || | | | || | ||| || | | ||| | ||| | || | | |||| | | | |||| | || | | ||| |||| |||| || | || |
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtaca-acgttaaccacctgccgcttcc---tcttgtcatgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgca----cacctacttacaaggcg-------cgtcttgattttcggttgcaactataatgcagtaaagtaatg-aaatttttgttcttctgaag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349825698|gb|FQ421797.1|FQ421797
EST:     GAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAG                         GCACCCCTTGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGA
genomic: GAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagac ... gcttgaacagGCACCCCTTGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGA
EST: gi|110406936|gb|EC972523.1|EC972523
EST:     GAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAG                         GCACCCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGAAGGAGGA
genomic: GAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagac ... gcttgaacagGCACCCCTTGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGA
EST: gi|351027768|gb|FQ446935.1|FQ446935
EST:     GAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAG                         GCACCCCTTGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGA
genomic: GAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagac ... gcttgaacagGCACCCCTTGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGA
EST: gi|32269925|gb|CD719084.1|CD719084
EST:     GAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAG                         GCACCCCTTGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGA
genomic: GAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagac ... gcttgaacagGCACCCCTTGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGA
EST: gi|110732898|gb|EE108585.1|EE108585
EST:     GAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAG                         GCACCCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGAAGGAGGA
genomic: GAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagac ... gcttgaacagGCACCCCTTGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGA