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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGATTGGTGATGCAATTGGGAAGTTGCATGATGGTAACCTTATTCATGGTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGgtgaggatttgtgcccttatttgatcatgtgaggatttgggttgttcacacctttttttgtcctcttcccatcccatgataaaatggtttttatccaactatgttatgactattttaccttctcctag

Basic information

species Vitis vinifera
transcript Vv07s0151g00550.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0151g00550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G324727_T01 (Zea mays), 5'ss of exon 8
GCAGATTGGTGATGCAATTGGGAAGTTGCATGATGGTAACCTTATTCATGGTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGgtgaggat--------ttgtgcccttatttgatcatgtgaggatttgggttgttcacacctttttttgtcctcttcccatcccatgataaaatggtttttatccaactatgttatgactattttaccttctcctag------------------------
 || || ||  |||| ||||| ||  | ||||||||   |||| ||||||||||||||||||| ||||||||| | ||  |||   ||| ||||||| ||||| | |         ||  |||   |  |  |  |    | |||    || || |    |    | |   |  |  | |  || ||| |   |   |  | ||| ||  |||    |     ||     |   |                         
ACAAATAGGAAATGCCATTGGCAAACTACATGATGGAGGCCTTGTTCATGGTGATTTGACCACGTCAAACATGATGATTAAGAACAGTAACAATCAATTGgtgggtacaatatccgtttcgccaacaccttctgtttaatgcattcactttattgagctatggagtcgagtttatggc-tgtcaagatcagcagcaatcgacccatctgagttgcatcgtggctattgatttgcaacttatatgtgttaaatcttggcag

upper sequence: Vv07s0151g00550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G04930.1 (Glycine max), 5'ss of exon 4
GCAGATTGGTGATGCAATTGGGAAGTTGCATGATGGTAACCTTATTCATGGTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGgtgaggatttgtgcccttatttgatcatgtgaggatttgggttgttcacacctttttttgtcctcttcccatcccatgataaaatggtttttatccaactatgttat---gactattttaccttctcctag
 || ||||||||| ||||||| ||| | |||||||||   ||||||||||||||||| || ||||||||||||||| || |||||| ||| || ||  |||||||      | |  | ||   ||| | | |||   ||   | | ||     || |   | |   |    | |||||| |||     | ||||| |  | |||||       ||  |    ||    |||
CCAAATTGGTGATACAATTGGAAAGCTACATGATGGTGGTCTTATTCATGGTGATTTAACAACATCAAACATGTTACTAAAGAGTGATACAAAGCAGTTGgtgag------ttcattcat---atctttttaggtcctgtaatatccaa----ttatccattcatgttatgtaccatgagaaa-----tgttatcaatttgtgttacagaagttaagtgtattttgtttag

upper sequence: Vv07s0151g00550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G06300.1 (Glycine max), 5'ss of exon 4
-GCAGATTGGTGATGCAATTGGGAAGTTGCATGATGGTAACCTTATTCATGGTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGgtgaggatttgtgcccttatttgatcatgtgaggatttgggttgttcacacctttttttgtcctcttcccatcccatgataaaatggtttttatccaactatgttatgactattttaccttctcctag-
  || ||||||||||||||||| ||| | |||||||||   ||||||||||||||||| || |||||||| |||||| |  |||||| ||| || ||  |||||||      | |  | ||    || | | |||   ||   | | ||    |   || ||  | |     | |||||| |||     | ||||| |  | |||||      |       | |  |   
CCCAAATTGGTGATGCAATTGGAAAGCTACATGATGGTGGTCTTATTCATGGTGATTTAACAACATCAAATATGTTACTGAAGAGTGATACAAAGCAGTTggtgag------ttcattcat---gtcttcttaggtcctgtaatatccaattatccattcgtgttat----gtaccatgagaaa-----tgttatcaatttgtgttacagaagtccagttattttgtgta

upper sequence: Vv07s0151g00550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G26110.1 (Arabidopsis thaliana), 5'ss of exon 4
GCAGATTGGTGATGCAATTGGGAAGTTGCATGATGGTAACCTTATTCATGGTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGgtgaggatttgtgcccttatttgatcatgtgaggatttgggttgttcacacctttttttgtcctcttcccatcccatgataaaatggtttttatccaactatgttatgactattttaccttctcctag
 |||||||| | ||||||||  ||| | |||||||||  | |   |||||||||||||||||||||||| |||||| |    ||||| || ||||| ||||| || || |     |  |  |  | ||       | | | ||  | ||   |  ||     |  |    ||  | |     |                                             
TCAGATTGGGGCTGCAATTGCTAAGCTCCATGATGGTGGCTTGGCTCATGGTGATTTGACCACATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTGgtaagtatct----tcagaggttgtgataaagttctcttgattagttacttatgattcatgaccatggatatgtcttccctcag--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71888132|gb|DT037187.1|DT037187
EST:     GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTG                         GTCCTCATTGATTTTGGGT
genomic: GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGgtgaggattt ... cttctcctagGTCCTCATTGATTTTGGGT
EST: gi|26265932|gb|CA816995.1|CA816995
EST:     GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTG                         GTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA
genomic: GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGgtgaggattt ... cttctcctagGTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA
EST: gi|110727233|gb|EE103760.1|EE103760
EST:     GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTG                         GTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA
genomic: GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGgtgaggattt ... cttctcctagGTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA
EST: gi|37188657|gb|CF608006.1|CF608006
EST:     GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTG                         GTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA
genomic: GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGgtgaggattt ... cttctcctagGTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA
EST: gi|28958875|gb|CB339437.1|CB339437
EST:     GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTG                         GTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA
genomic: GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGgtgaggattt ... cttctcctagGTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA
EST: gi|27581764|gb|CB004459.1|CB004459
EST:     GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTG                         GTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA
genomic: GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGgtgaggattt ... cttctcctagGTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA
EST: gi|28959679|gb|CB339840.1|CB339840
EST:     GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTG                         GTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA
genomic: GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGgtgaggattt ... cttctcctagGTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA
EST: gi|26257835|gb|CA808898.1|CA808898
EST:     GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTG                         GTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA
genomic: GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGgtgaggattt ... cttctcctagGTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA
EST: gi|71887554|gb|DT036609.1|DT036609
EST:     GTGATTTGACCACATCAAACATGTTAATACAGAATGGTACCAATCAACTG                         GTCCTCATTGAT
genomic: GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGgtgaggattt ... cttctcctagGTCCTCATTGAT
EST: gi|26258595|gb|CA809658.1|CA809658
EST:     GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTG                         GTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA
genomic: GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGgtgaggattt ... cttctcctagGTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA
EST: gi|30126284|gb|CB911623.1|CB911623
EST:     GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTG                         GTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA
genomic: GTGATTTGACCACATCAAACATGTTAATACAGAGTGGTACCAATCAACTGgtgaggattt ... cttctcctagGTCCTCATTGATTTTGGGTTAAGCTTCACATCAACCCTTCATGAAGATAAA