Sequence
atgc intronic sequence ATGC exonic sequenceATTACTGGAAAAGCGGTAATGCTTGATGAGATTATCAACTATGTGCAATCACTGCAACGACAGGTTGAGgtatgcgtttctgatatctgaagaataagtttcatctctttattatgaatataaaatcacatgaagaattcctctgctgacttttaaagatctgaaacta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0151g00450.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g51910.1 (Oryza sativa), 5'ss of exon 5
ATTACTGGAAAAGCGGTAATGCTTGATGAGATTATCAACTATGTGCAATCACTGCAACGACAGGTTGAGgta-tgcgtttctgatatctgaagaataagtttcatctctttattatgaatataaaatcacatgaagaattcctctgctgacttttaaagatctgaaacta
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ATCACTGGTAAGGCAGTCATGCTTGATGAGATAATCAATTATGTACAGTCACTACAACGTCAAGTTGAGgtactattagggtggtggttcagttatttcttggacagttggaatatcactctgtaatctaacacaatctgaacttgcag---------------------
upper sequence: Vv07s0151g00450.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G385543_T01 (Zea mays), 5'ss of exon 5
ATTACTGGAAAAGCGGTAATGCTTGATGAGATTATCAACTATGTGCAATCACTGCAACGACAGGTTGAGgtatgcgtttctgatatctgaagaataagtttcatctctttattatgaatataaaatcacatgaagaattcctctgctgacttttaaagatctgaaacta---
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ATCACTGGCAAGGCAGTCATGCTCGATGAGATTATCAACTATGTGCAGTCATTGCAACGACAAGTCGAGgta-gtgttagtg-catctgtag------ctgaattgttttggaatatatgtggcatcttgttagtatatatccagtattctaatacagtttcgagcttgcag
upper sequence: Vv07s0151g00450.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G092091_T02 (Zea mays), 5'ss of exon 3
ATTACTGGAAAAGCGGTAATGCTTGATGAGATTATCAACTATGTGCAATCACTGCAACGACAGGTTGAGgtatgcgtttctgatatctgaagaataagtttcatctctttattatgaatataaaatcacatgaagaattcctctgctgacttttaaagatctgaaacta----
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ATCACTGGCAAGGCAGTCATGCTCGATGAGATTATCAACTATGTACAGTCATTGCAACGACAAGTGGAGgta-gtgatagtg-catctgtag------ttgaattgctttggaatatgtgtgacatcttgttagtatatataatccagttctaatacaatttcgaacttgcag
upper sequence: Vv07s0151g00450.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S68_190V6.1 (Physcomitrella patens), 5'ss of exon 3
-------------------------------ATTACTGGAAAAGCGGTAATGCTTGATGAGATTATCAACTATGTGCAATCACTGCAACGACAGGTTGAGgtatgcgtttctgatatctgaagaataagtttcat-ctctttattatgaatataaaatcacatgaagaattcctctgctgacttttaaagatctgaaacta----------------------------------
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CCTGCAGGACCTCGTACCCGGCTGCCGCAAAGTCACCGGCAAGGCAGTCATGCTTGACGAGATCATCAACTATGTTCAATCCCTCCAACGACAAGTTGAAgtatgtctcttacccattttcaacgcactgctaatgctattccattcatgtcttaggcacccttcttgttatcgctagtgatgaattgtagtctagtattgagttgtatcgtacactttgttatcttttttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30255666|gb|CB971798.1|CB971798EST: ATCAACTATGTGCAATCACTGCAACGACAGGTTGAG TTTTTGTCTATGAAACTTGCTACTGTCTACCCTGAAATGAATGTTCAGATA
genomic: ATCAACTATGTGCAATCACTGCAACGACAGGTTGAGgtatgcgttt ... tttcttgcagTTTTTGTCTATGAAACTTGCTACTGTCTACCCTGAAATGAATGTTCAGATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTACTGGAAAAGCGGTAATGCTTGATGAGATTATCAACTATGTGCAATCACTGCAACGACAGGTTGAGgtatgcgtttctgatatctgaagaataagtttcatctctttattatgaatataaaatcacatgaagaattcctctgctgacttttaaagatctgaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tataaaa