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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCAGCACTTAAGTATTGGGGACCTTCTACCCATATCAATTTCCCGgtaataatttgaaccccattggagtgcagtgatctgttggttctttgcaattgaaatgcagtcgtttgttttttggcag

Basic information

species Vitis vinifera
transcript Vv07s0151g00440.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os07g03250.1 (Oryza sativa), 5'ss of exon 3
GGGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCAGCACTTAAGTATTGGGGACCTTCTACCCATATCAATTTCCCGgtaataatttgaaccccattggagtgcagtgatctgttggttctttgcaattgaaatgcagtcgtttgttttttg-gcag----------------------
| || ||||||||||| || ||||| || ||||| ||||| ||||| || || ||||||||||| ||||| || || ||||| ||||||||||| | |  ||  | |||  | |       |||||  || || |  | |    |    ||   |||  |  || |||                       
GTGGGTATGACATGGAGGAGAAAGCGGCGAGAGCGTATGACCTGGCGGCGCTCAAGTATTGGGGCCCTTCCACACACATCAACTTCCCGgtaattaatc-aattcaattaaaatttttgattctgtaagtactgttaattaattagttggttaattgaataatgtgcatgcatatgtatgtatgtatgcag

upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g12950.1 (Oryza sativa), 5'ss of exon 5
GGGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCAGCACTTAAGTATTGGGGACCTTCTACCCATATCAATTTCCCGgtaataatt-tgaaccc--------cattggagtgcagtgatctg-ttgg----ttctttgcaattgaaatgcagtcgtttgtttt--ttggcag
| ||||||||||  ||||| |||||||| || |||||||||||||| || || || || ||||| |  ||||| ||||| ||||||||||||   ||  |||| ||        |  |||  |   |   | || ||||    | | ||     | |  || | |  ||| || |  |||||||
GTGGTTATGACACTGAAGATAAAGCTGCGAGGGCTTATGATCTGGCTGCGCTGAAATACTGGGGGCTATCTACGCATATAAATTTCCCGgtatggatgatgaaaccgtgtagtacggtgggatatgggactttgattggagtatccattttctgtaatgtggactaatttattgtgtttggcag

upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G04910.1 (Glycine max), 5'ss of exon 5
GGGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCAGCACTTAAGTATTGGGGACCTTCTACCCATATCAATTTCCCGgtaataatttgaaccccattggagtgcagtgatctgttggttctttgcaattgaaatgcagtcgtttgttttt--tggcag-----------------------------
|||||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| ||  ||||||| |||||||| ||||| |||   ||    ||    |    | || | ||   |  |||    || | | |||      |  |||  |  |||                             
GGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATATGGCCGCACTCAAGTATTGGGGACCCTCCTCCCATATAAATTTCCCTgtaatgatt---actttttttttttcttctcattttttttctgattgggtctgtatt-cagcttccaggatttaataacagtaactaatgcatgtatgatctattaacag

upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G17010.1 (Glycine max), 5'ss of exon 5
GGGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCAGCACTTAAGTATTGGGGACCTTCTACCCATATCAATTTCCCGgtaataatttgaaccccattggag--------tgcagtgatctgttggttc-----tttgcaattgaaatgcagtcgtttgttttttggcag-----------------------------------
|||||||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||| || || || || || || || ||||||| |   | |  |||            | ||    ||   ||  ||     |  | || ||  |   |     |  | || |||||                                    
GGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTAGCTGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTgtaataactaataacttatttctcttttctcttccatgtttccactgactcaagtttcagtaactgtgactaaaataataatcttatggcattttttttcttcttttccattctcttctaataaaag

upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G40380.1 (Glycine max), 5'ss of exon 4
GGGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCAGCACTTAAGTATTGGGGACCTTCTACCCATATCAATTTCCCGgtaataatt---tgaaccccattggagtgcagtgatctgttggttctttgcaattgaaatgcagtcgtttgttttttggcag----------------
|||||||||| |||||||||||||| ||||||||||||||| |||| ||||| |||||||||||||| ||  | ||||| |||||||| ||||| |||   |     | | |  |        ||  ||  ||  |  ||       ||  | |    |   |  ||  ||                
GGGGTTATGATATGGAAGAAAAAGCAGCAAGAGCTTATGATATGGCCGCACTCAAGTATTGGGGACCCTCCTCTCATATAAATTTCCCAgtaatgattactttctttctaatttatcttctcaatgagtccgtattcagcttccaggatttaataacgtaactaatgcaagtatgaccttttaacag

upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G22970.1 (Glycine max), 5'ss of exon 7
GGGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCAGCACTTAAGTATTGGGGACCTTCTACCCATATCAATTTCCCGgta------ataatttgaaccccattggagtgcagtgat----ctgttggttctttgcaattg-aaatgcagtcgtttgttttttggcag-------------------------------
|||||||||| ||||||||||||||||| |||||||||||||| || ||||| |||||||||||||| || || || || || || || |||      ||||| |    |   ||    | |  || |    || |    |    | || ||  | |  | |  |    |  ||| ||                                
GGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTgtaaaactaataatatatttcttttttctcttccatgtttccactctcaagttgcagtaactgtgactaaaataataatctcattgacatttttttcttttccattctcttctaataacag

upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ26861 (Selaginella moellendorffii), 5'ss of exon 4
GGGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCAGCACTTAAGTATTGGGGACCTTCTACCCATATCAATTTCCCGgtaataatttgaaccccattggagtgcagtgatctgttggttctttgcaattgaaatgcagtcgtttgttttttggcag
||||||||||||  ||||| ||||| ||  |||| ||||||||||| || || ||||||||||||||| | |||   ||||| || || |||| | |     | |   |    | || ||| ||       |  ||    | || | |     |||| ||     |||
GGGGTTATGACAAAGAAGAGAAAGCAGCGCGAGCGTATGATCTGGCGGCGCTCAAGTATTGGGGACCTACGACCACCATCAACTTTCCTgtaagattccttcctcttgtattattca-tgaactcacaagaccgtgtg--taaactacg---ttttggttggcatcag

upper sequence: Vv07s0151g00440.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ21317 (Selaginella moellendorffii), 5'ss of exon 4
GGGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCAGCACTTAAGTATTGGGGACCTTCTACCCATATCAATTTCCCGgtaataatttgaaccccattggagtgcagtgatctgttggttctttgcaattgaaatgcagtcgtttgttttttggcag
|||||||||||| |||||| ||||| ||  |||| ||||||||||| || || ||||||||||||||| | |||   ||||| || || || | | |     | |   |    | || ||| ||       |  ||    | || | |     |||| ||     |||
GGGGTTATGACAAGGAAGAGAAAGCAGCGCGAGCGTATGATCTGGCGGCGCTCAAGTATTGGGGACCTACGACCACCATCAACTTTCCTgtgagattccttcctcttgtattattca-tgaactcacaagaccgtgtg--taaactacg---ttttgattggcatcag