1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTTGCAGTCAAGAAAATGAAGAGAAAGTTTTTTTTCTGGGAGGAATGCATGAACCTACGAGAAGTCAAGgtatgtgaccatgtcatttgtttaaatgggggaagtgaagaagcaagacagctgattgatacatattaacatttccttttcag
species | Vitis vinifera |
transcript | Vv07s0151g00350.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGGGAGGAATGCATGAACCTACGAGAAGTCAAG TCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTCEST: gi|352794086|gb|FQ479328.1|FQ479328
genomic: CTGGGAGGAATGCATGAACCTACGAGAAGTCAAGgtatgtgacc ... tccttttcagTCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTC
EST: CTGGGAGGAATGCATGAACCTACGAGAAGTCAAG TCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTCEST: gi|351036041|gb|FQ463886.1|FQ463886
genomic: CTGGGAGGAATGCATGAACCTACGAGAAGTCAAGgtatgtgacc ... tccttttcagTCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTC
EST: CTGGGAGGAATGCATGAACCTACGAGAAGTCAAG TCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTCEST: gi|352794210|gb|FQ479452.1|FQ479452
genomic: CTGGGAGGAATGCATGAACCTACGAGAAGTCAAGgtatgtgacc ... tccttttcagTCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTC
EST: CTGGGAGGAATGCATGAACCTACGAGAAGTCAAG TCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTCEST: gi|351046353|gb|FQ452969.1|FQ452969
genomic: CTGGGAGGAATGCATGAACCTACGAGAAGTCAAGgtatgtgacc ... tccttttcagTCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTC
EST: CTGGGAGGAATGCATGAACCTACGAGAAGTCAAG TCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTCEST: gi|352794331|gb|FQ481562.1|FQ481562
genomic: CTGGGAGGAATGCATGAACCTACGAGAAGTCAAGgtatgtgacc ... tccttttcagTCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTC
EST: CTGGGAGGAATGCATGAACCTACGAGAAGTCAAG TCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTCEST: gi|352794414|gb|FQ481645.1|FQ481645
genomic: CTGGGAGGAATGCATGAACCTACGAGAAGTCAAGgtatgtgacc ... tccttttcagTCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTC
EST: CTGGGAGGAATGCATGAACCTACGAGAAGTCAAG TCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTCEST: gi|351047787|gb|FQ459007.1|FQ459007
genomic: CTGGGAGGAATGCATGAACCTACGAGAAGTCAAGgtatgtgacc ... tccttttcagTCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTC
EST: AGGAATGCCTGAACCTACGAGAAGTCAAG TCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTCEST: gi|37190302|gb|CF609651.1|CF609651
genomic: AGGAATGCATGAACCTACGAGAAGTCAAGgtatgtgacc ... tccttttcagTCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTC
EST: AGAGAAAGNNNNNNNNCTGGGAGGAATGCATGAACCTACGAGAAGTCAAG TCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTC
genomic: AGAGAAAGTTTTTTTTCTGGGAGGAATGCATGAACCTACGAGAAGTCAAGgtatgtgacc ... tccttttcagTCCCTCCGGAAATTGAATCATCCCAATATCATAAAGTTGAAGGAGATTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCAGTCAAGAAAATGAAGAGAAAGTTTTTTTTCTGGGAGGAATGCATGAACCTACGAGAAGTCAAGgtatgtgaccatgtcatttgtttaaatgggggaagtgaagaagcaagacagctgattgatacatattaacatttccttttcag
- - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT