1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GATGTTTGTGGATTCATGCAAACGCTTGCGCATAATGAAAGGAAAAGAGGCGATAGGGCTCGgttagtatcttcaaattattgctaattaaacctttctataaatgatatttgagtttatttttagaaatttcttattttctttaggtatttatgctaatgcaatttttatttttatttttgggtttaatttcag
species | Vitis vinifera |
transcript | Vv07s0141g00290.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCATGCAAACGCTTGCGCATAATGAAAGGAAAAGAGGCGATAGGGCTCG CACCTAGAGCCATGGAGAAATGCAAGAATAGGAGCTAAGGCAGTGGCCACCEST: gi|110690342|gb|EE067357.1|EE067357
genomic: TTCATGCAAACGCTTGCGCATAATGAAAGGAAAAGAGGCGATAGGGCTCGgttagtatct ... ttaatttcagCACCTAGAGCCATGGAGAAATGCAAGAATAGGAGCTAAGGCAGTGGCCACC
EST: NCATGCAA-CGCTTGCGCATAATGAAAGGAAAAAGAG-CGATAGGGCTCG CACCTAGAGCCATGGAGAAATGCAAGAATAGGAGCTAAGGCAGTGGCCACEST: gi|110374116|gb|EC938663.1|EC938663
genomic: -CATGCAAACGCTTGCGCATAATGAAAGGAAAA-GAGGCGATAGGGCTCGgttagtatct ... ttaatttcagCACCTAGAGCCATGGAGAAATGCAAGAATAGGAGCTAAGGCAGTGGCCAC
EST: TTCATGCAAACGCTTGCGCATAATGAAAGGAAAAGAGGCGATAGGGCTCG CACCTAGAGCCATGGAGAAATGCAAGAATAGGAGCTAAGGCAGTGGCCACCEST: gi|22011282|gb|BQ796316.1|BQ796316
genomic: TTCATGCAAACGCTTGCGCATAATGAAAGGAAAAGAGGCGATAGGGCTCGgttagtatct ... ttaatttcagCACCTAGAGCCATGGAGAAATGCAAGAATAGGAGCTAAGGCAGTGGCCACC
EST: TTCATGCAAACGCTTGCGCATAATGAAAGGAAAAGAGGCGATAGGGCTCG CACCTAGAGCCATGGAGAAATGCAAGAATAGGAGCTAAGGCAGTGGCCACC
genomic: TTCATGCAAACGCTTGCGCATAATGAAAGGAAAAGAGGCGATAGGGCTCGgttagtatct ... ttaatttcagCACCTAGAGCCATGGAGAAATGCAAGAATAGGAGCTAAGGCAGTGGCCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTTTGTGGATTCATGCAAACGCTTGCGCATAATGAAAGGAAAAGAGGCGATAGGGCTCGgttagtatcttcaaattattgctaattaaacctttctataaatgatatttgagtttatttttagaaatttcttattttctttaggtatttatgctaatgcaatttttatttttatttttgggtttaatttcag
- - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - AAGAGG