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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTGGCGTGGGGCACATGCGTGACACCAAAACAAAAGgtagaagcagggttaagatattgtggatgtgtgcaactgttgatttttttttttttttttgatgtggctgttgattttgataatgtttataatgtgttctttttttcttacag

Basic information

species Vitis vinifera
transcript Vv07s0141g00110.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 3
GATTTGGCGTGGGGCACATGCGTGACACCAAAACAAAAGgtagaagcagggttaagatatt----gtggatgtgtgcaactgttgatttttttttttttttttgatgtggctgttgattttgataatgtttataatgtgttctttttttcttacag
| ||||| || |||||||||||||||||||| ||||||||||||   |   |||  || ||    |||||| ||   || ||  ||| |  | |||| |  |  || |   |  |  ||| | | |  | |  |                      
GGTTTGGTGTTGGGCACATGCGTGACACCAAGACAAAAGgtagatagaaa-ttaccatctttctcgtggatatgcttaattg--gatataatattttatagtatatttt-ttaatcttttggttcacatcttcag---------------------

upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G03660.1 (Glycine max), 5'ss of exon 4
GATTTGGCGTGGGGCACATGCGTGACACCAAAACAAAAGgtagaagcagggttaagatattgtggatgtgtgcaactgttgatttttttttttttttttgatgtggctgttgatttt---gataatgtttataatgtgttctttttttcttacag
| ||||| || ||||||||||||||||| || ||||||||||||   |   |||  || ||    |||  |     | ||  |   | |  | ||||   |  |   | || || ||   | | |  | |  |                      
GGTTTGGTGTTGGGCACATGCGTGACACAAAGACAAAAGgtagatagaaa-ttactatctttctcatggatatgcttatt--tggatataatattttacaacatattttttaatcttttggttcacatctccag---------------------