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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagctttaaatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatattcatatatacctgcatgtagtta...

Basic information

species Vitis vinifera
transcript Vv07s0130g00310.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712155|gb|FC061527.1|FC061527
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|351021979|gb|FQ437766.1|FQ437766
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|351049571|gb|FQ429193.1|FQ429193
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|349826636|gb|FQ418727.1|FQ418727
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|349817579|gb|FQ407369.1|FQ407369
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACGG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|351018506|gb|FQ424613.1|FQ424613
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|349808016|gb|FQ402407.1|FQ402407
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACGG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|37184961|gb|CF604314.1|CF604314
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|351019477|gb|FQ429612.1|FQ429612
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|349816072|gb|FQ399303.1|FQ399303
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACGG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|351041001|gb|FQ443777.1|FQ443777
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|349816179|gb|FQ403675.1|FQ403675
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACGG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|349815328|gb|FQ400483.1|FQ400483
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACGG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|351034264|gb|FQ448061.1|FQ448061
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|161717594|gb|FC066898.1|FC066898
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|30129333|gb|CB914672.1|CB914672
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|349827064|gb|FQ421337.1|FQ421337
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|349829875|gb|FQ422188.1|FQ422188
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|349808752|gb|FQ406602.1|FQ406602
EST:     AAAGCAAACTGCTACAGACTTCGTCAAAGGTTTAGATCCTTCTTCACGAG                         -CTTTCCCACCGCAAGAAC
genomic: AAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCAC-AGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAAC
EST: gi|349829450|gb|FQ419982.1|FQ419982
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|110729851|gb|EE106263.1|EE106263
EST:     TAAATCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|349807552|gb|FQ401917.1|FQ401917
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|351017764|gb|FQ436117.1|FQ436117
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
EST: gi|349809458|gb|FQ411956.1|FQ411956
EST:     TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAG                         GCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT
genomic: TAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagcttta ... tgattgtcagGCTTTCCCACAGCAAGAACAGTTGCAGCAGCAATATTGTGATAGGGTTCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTAAAGCAAACTGCTACAGACTTCGTCAAAGGTTTTGATCCTTCGTCACAGgtgagctttaaatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatattcatatatacctgcatgtagtta

- - - AAGCAA