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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAGCTACTGCAACCATGCTGCATATAATCACAGAGGTTGAACCTTGTAATCCATTGGAATACCAGAATCAGCTTCTGAGTGTACTCAAAATCAGTAAGgtttgtagccaaagaaattggatattttgtttctatattagcttttatctcttactttgactgagataatccaaattcattgcctcatcagttcaattttggctatgcctttgacag

Basic information

species Vitis vinifera
transcript Vv07s0129g01100.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110417157|gb|EC983188.1|EC983188
EST:     ATCCATTGGAATACCAGAATCAGCTCCTGAGTGTACTCAAAATCAGTAAG                         GACGATGTGGATGACTGCTATAAACTTATACTGGAATTTTTGGGTAGCCAT
genomic: ATCCATTGGAATACCAGAATCAGCTTCTGAGTGTACTCAAAATCAGTAAGgtttgtagcc ... cctttgacagAACGATGTGGATGACTGCTATAAACTTATCCTGGAATTTTTGGGTAGCCAT
EST: gi|110392748|gb|EC957095.1|EC957095
EST:     ATCCATTGGAATACCAGAATCAGCTCCTGAGTGTACTCAAAATCAGTAAG                         GACGATGTGGATGACTGCTATAAACTTATCCTGGAATTTTTGGGTGGCCAT
genomic: ATCCATTGGAATACCAGAATCAGCTTCTGAGTGTACTCAAAATCAGTAAGgtttgtagcc ... cctttgacagAACGATGTGGATGACTGCTATAAACTTATCCTGGAATTTTTGGGTAGCCAT
EST: gi|34231991|gb|CF369040.1|CF369040
EST:     GAATCAGCTCCTGAGTGTACTCAAAATCAGTAAG                         GACGATGTGGATGACTGCTATAAACTTATACTGGAATTTTTGGGTAGCCAT
genomic: GAATCAGCTTCTGAGTGTACTCAAAATCAGTAAGgtttgtagcc ... cctttgacagAACGATGTGGATGACTGCTATAAACTTATCCTGGAATTTTTGGGTAGCCAT
EST: gi|45368096|gb|CK906455.1|CK906455
EST:     ATCCATTGGAATACCAGAATCAGCTCCTGAGTGTACTCAAAATCAGTAAG                         GACGATGTGGATGACTGCTATAAACTTATCCTGGAATTTTTGGGTGGCCAT
genomic: ATCCATTGGAATACCAGAATCAGCTTCTGAGTGTACTCAAAATCAGTAAGgtttgtagcc ... cctttgacagAACGATGTGGATGACTGCTATAAACTTATCCTGGAATTTTTGGGTAGCCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTAGCTACTGCAACCATGCTGCATATAATCACAGAGGTTGAACCTTGTAATCCATTGGAATACCAGAATCAGCTTCTGAGTGTACTCAAAATCAGTAAGgtttgtagccaaagaaattggatattttgtttctatattagcttttatctcttactttgactgagataatccaaattcattgcctcatcagttcaattttggctatgcctttgacag

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