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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGCTCGTAAGAATGATGCATCTTCCGCAAGCACCACCAATCTATCAGTTAAGGTGTCAAGACCAGGTTCTAGTGGGGGGCCTGCTTATGATGAAAAGgtgctttttgggccaatgcagaaattacaattttattatagaatttgagtctcttactggtttatttatttatttttttctaatgcag

Basic information

species Vitis vinifera
transcript Vv07s0129g01080.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110732455|gb|EE107757.1|EE107757
EST:     TAAGGTGTCAAGACCAGGTTTCTAGTGGGGGGCCTGCTTATGATGAAAAG                         ATCACAGAGTTGAAGCTGTCAATAGATAGCCTTGGAGAAAGAGAGGGACTT
genomic: TAAGGTGTCAAGACCAGGTT-CTAGTGGGGGGCCTGCTTATGATGAAAAGgtgctttttg ... tctaatgcagATCACAGAGTTGAAGCTGTCAATAGATAGCCTTG-AGAAGGAGAGGGACTT
EST: gi|34544613|gb|CF512845.1|CF512845
EST:     TTAAGGTGTCAAGACCAGGTTCTAGTGGGGGGCCTGCTTATGATGAAAAG                         ATCACAGAGTTGAAGCTGTCAATAGATAGCCTTGAGAAGGAGAGGGACTTC
genomic: TTAAGGTGTCAAGACCAGGTTCTAGTGGGGGGCCTGCTTATGATGAAAAGgtgctttttg ... tctaatgcagATCACAGAGTTGAAGCTGTCAATAGATAGCCTTGAGAAGGAGAGGGACTTC
EST: gi|110702076|gb|EE080376.1|EE080376
EST:     TTAAGGTGTCAAGACCAGGTTCTAGTGGGGGGCCTGCTTATGATGAAAAG                         ATCACAGAGTTGAAGCTGTCAATAGATAGCCTTGAGAAGGAGAGGGACTTC
genomic: TTAAGGTGTCAAGACCAGGTTCTAGTGGGGGGCCTGCTTATGATGAAAAGgtgctttttg ... tctaatgcagATCACAGAGTTGAAGCTGTCAATAGATAGCCTTGAGAAGGAGAGGGACTTC
EST: gi|33406833|gb|CF212460.1|CF212460
EST:     TTAAGGTGTCAAGACCAGGTTCTAGTGGGGGGCCTGCTTATGATGAAAAG                         ATCACAGAGTTGAAGCTGTCGATAGATAGCCTTGAGAAGGAGAGGGACTTC
genomic: TTAAGGTGTCAAGACCAGGTTCTAGTGGGGGGCCTGCTTATGATGAAAAGgtgctttttg ... tctaatgcagATCACAGAGTTGAAGCTGTCAATAGATAGCCTTGAGAAGGAGAGGGACTTC