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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAATATCATTGCCCGGTGCTGAATAAAGTTTTCACTGAATTTACACACATAGTTGCTGTAAAGACTACAGGAAATGTGTTCTGTTATGAGgtttgtttttcattgattgtcaaaagtggccatgtcgctttataattttttgttgcgcagaggtatttaatctgtgtacatttcatcttttgtttctgctcaatag

Basic information

species Vitis vinifera
transcript Vv07s0129g00040.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0129g00040.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g10400.2 (Oryza sativa), 5'ss of exon 4
GAGAATATCATTGCCCGGTGCTGAATAAAGTTTTCACTGAATTTACACACATAGTTGCTGTAAAGACTACAGGAAATGTGTTCTGTTATGAGgtttgtttttcattgattgtcaaaagtggccatgtcgctttataattttttgttgcgcagaggtatttaatctgtgtacatttcatcttttgtttctgctcaatag
  || |  || ||||| ||  ||||||||||||| || ||||| || || |||||||||||||||||||| || || || ||||||||||||||  | |||     | || |  ||     | || | |  ||||     | || | |       | ||||     || |   || |    |    |           
--GAGTTCCAGTGCCCTGTTTTGAATAAAGTTTTTACAGAATTCACGCATATAGTTGCTGTAAAGACTACTGGGAACGTCTTCTGTTATGAGGTGGGGTTTGgtgagctttttcaagtgaacaatttagtattatggacctatggtac-------tttttagctcatgcattcttgactcataaaatgcag-------

upper sequence: Vv07s0129g00040.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G007486_T02 (Zea mays), 5'ss of exon 4
GAGAATATCATTGCCCGGTGCTGAATAAAGTTTTCACTGAATTTACACACATAGTTGCTGTAAAGACTACAGGAAATGTGTTCTGTTATGAGgtttgtttttcattgattgtcaaaagtggccatgtcgct-ttataattttttgttg-cgcagaggtatttaatctgtgtacatttcatcttttgtttctgctcaatag
|||| | ||| || || || ||||| |||||||| || ||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||   |||  ||     ||||| | |  | | | ||||  | |||| ||  |  | | ||   |  | |  | |||                          
GAGAGTTTCAGTGTCCTGTTCTGAACAAAGTTTTTACAGAATTCACACACATAGTTGCTGTAAAAACTACTGGAAATGTCTTCTGCTATGAGgtg-atttcatattcttttc---aagtgtctagcttgatattatggtattttcttatcttacatgttaatgctttacgaacacag-----------------------

upper sequence: Vv07s0129g00040.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G007486_T01 (Zea mays), 5'ss of exon 4
GAGAATATCATTGCCCGGTGCTGAATAAAGTTTTCACTGAATTTACACACATAGTTGCTGTAAAGACTACAGGAAATGTGTTCTGTTATGAGgtttgtttttcattgattgtcaaaagtggccatgtcgct-ttataattttttgttg-cgcagaggtatttaatctgtgtacatttcatcttttgtttctgctcaatag
     | ||| || || || ||||| |||||||| || ||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||   |||  ||     ||||| | |  | | | ||||  | |||| ||  |  | | ||   |  | |  | |||                          
-----TTTCAGTGTCCTGTTCTGAACAAAGTTTTTACAGAATTCACACACATAGTTGCTGTAAAAACTACTGGAAATGTCTTCTGCTATGAGgtg-atttcatattcttttc---aagtgtctagcttgatattatggtattttcttatcttacatgttaatgctttacgaacacag-----------------------

upper sequence: Vv07s0129g00040.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G05130.1 (Glycine max), 5'ss of exon 4
GAGAATATCATTGCCCGGTGCTGAATAAAGTTTTCACTGAATTTACACACATAGTTGCTGTAAAGACTACAGGAAATGTGTTCTGTTATGAGgtttgtttttcattgattgtcaaaagtggccatgtcgctttataattttttgttgcgcagaggtatttaatctgtgtacatttcatcttttgtttctgctcaatag
||||||||||||| || ||||| || |||||||||||||||||||| || || || || || ||||| ||||||||||||||||| ||||||||||||||||||  |||  | |    |    |||        |||||| ||     ||||| |   || || | | || |  | || | | |    |         
GAGAATATCATTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACTCATATTGTGGCAGTGAAGACCACAGGAAATGTGTTCTGCTATGAGgtttgtttttcag-gatccttagtgttaataatgc-------taatttcttaa---gcagatgatatttatatttatataagttatttatgggaattag-------

upper sequence: Vv07s0129g00040.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G40170.1 (Glycine max), 5'ss of exon 4
GAGAATATCATTGCCCGGTGCTGAATAAAGTTTTCACTGAATTTACACACATAGTTGCTGTAAAGACTACAGGAAATGTGTTCTGTTATGAGgtttgtttttcattgattgtcaaaagtggccatgtcgctttataattttt-tgttgcgcagaggtatttaatctgtgtacatttcatcttttgtttctgctcaatag
||||||||||||| || ||||| || ||||||||||||||||||||||| || || || || ||||| |||||||| |||||||| ||||||||| ||||||||  |||  | |    |    |||    ||| | || |   || |    | |  ||| |||  | ||   |||                        
GAGAATATCATTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACACATATTGTGGCAGTGAAGACCACAGGAAACGTGTTCTGCTATGAGgttcgtttttcag-gatccttagtgttaataatgctaatttcttatgtagatggtatttatatttatctaagttatgggaattag----------------------

upper sequence: Vv07s0129g00040.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G67530.1 (Arabidopsis thaliana), 5'ss of exon 4
GAGAATATCATTGCCCGGTGCTGAATAAAGTTTTCACTGAATTTACACACATAGTTGCTGTAAAGACTACAGGAAATGTGTTCTGTTATGAGgtttgtttttcattgattgtcaaaagtggccatgtcgctttataattttttgttgcgcagagg--tatttaatctgtgtacatttcatcttttgtttctgctcaatag
|||| |||||||| || || || || ||||| ||||||||||||||||| || |||||||| |||||||| |||||||| ||||| || |||||||||||||  ||  || |              | ||||    |||||| ||| ||  ||    ||||    ||||||| ||||                       
GAGAGTATCATTGTCCTGTTCTAAACAAAGTCTTCACTGAATTTACACATATTGTTGCTGTCAAGACTACTGGAAATGTATTCTGCTACGAGgtttgttttttttttttttt-----------gctttgctt----atttttggtttcgatgattcttattgttgctgtgtaaatttag---------------------